Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d024832_circ_g.1 |
ID in PlantcircBase | zma_circ_010253 |
Alias | zma_circ_0000200 |
Organism | Zea mays |
Position | chr10: 90134666-90139894 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d024832 |
Parent gene annotation |
Sodium/hydrogen exchanger |
Parent gene strand | + |
Alternative splicing | Zm00001d024832_circ_g.2 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d024832_T009:8 Zm00001d024832_T007:9 Zm00001d024832_T011:5 Zm00001d024832_T013:4 Zm00001d024832_T008:8 Zm00001d024832_T012:5 Zm00001d024832_T010:7 Zm00001d024832_T004:10 Zm00001d024832_T001:10 Zm00001d024832_T006:8 Zm00001d024832_T005:6 Zm00001d024832_T014:7 Zm00001d024832_T003:9 Zm00001d024832_T002:10 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.114425003 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
90134705-90134777(+) |
Potential amino acid sequence |
MGLGLGALLKSGGLSVSDHDAIVSINIFIALLCSCIVIGHLLEGNRWVNESITALVMGLITGGV ILLVTNGTNSRILVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFITIILFGAIGTLISFVIIS LGAMGLFKKLDVGPLELGDYLAIGAIFSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVV LFNAIENLDIDNFDAIVLLNFVGKFLYLFFTSTILGVATGLLSAYIIKKLCFARHSTDREVSIM ILMAYLSYMISMLLDLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHTFATLSFIAEIFLFLYV GMDALDIEKWKLASSRLLCAAVDLLAWRHGPGFGSSSQIRRALGLGSRRHRLD*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |