Detail information of BGIOSGA026475_circ_g.7


General Information
CircRNA Name BGIOSGA026475_circ_g.7
ID in PlantcircBase osi_circ_007918
Alias 8:30109798|30110161
Organism Oryza sativa ssp. indica
Position chr8: 30109798-30110161  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA026475
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA026475_circ_g.1 BGIOSGA026475_circ_g.2 BGIOSGA026475_circ_g.3 BGIOSGA026475_circ_g.4 BGIOSGA026475_circ_g.5 BGIOSGA026475_circ_g.6 BGIOSGA026475_circ_g.8 BGIOSGA026475_circ_g.9 BGIOSGA026475_circ_g.10 BGIOSGA026475_circ_g.11 BGIOSGA026475_circ_g.12
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA026475-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCAACGAATTTAGGGTTCAGGGCCAGTGTTTTCTGTTGCTGGAAGTCAGCTACAAGACTGAGC
ATCAGTTTACGTGACAGCACCTGACCAGCTTCCCACtgttgaaagaaggtcatctttgagttga
agggcaagctccttcttaataaaggtacggacagcatgaactgcatcaggatctgcaactggca
tcatatcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGTTGAAAGAAGGTCATCTTTGAGTTGAAGGGCAAGCTCCTTCTTAATAAAGGTACGGACAGCA
TGAACTGCATCAGGATCTGCAACTGGCATCATATCCATAATCTCCCCTTGACCGGGCAAAGTTA
TCGCTTTCGCAATGAATTCCTGAAAGAACACATGTTAGACATTTTACAGTTGAATTCCGTATGA
TAAAATCATAGTAGCATCAGAAAAAAAAAATACTTTATCCAAGCTTGTGTTCCGCAGGATTGAT
CTAAGTCCATCAACGAATTTAGGGTTCAGGGCCAGTGTTTTCTGTTGCTGGAAGTCAGCTACAA
GACTGAGCATCAGTTTACGTGACAGCACCTGACCAGCTTCCCAC
Conservation Information
Conserved circRNAs osa_circ_038117*
PMCS
Functional Information
Coding potential Y
Potential coding position 30110129-30110134(-)
30109873-30110134(-)
Potential amino acid sequence MLSLVADFQQQKTLALNPKFVDGLRSILRNTSLDKEFIAKAITLPGQGEIMDMMPVADPDAVHA
VRTFIKKELALQLKDDLLSTVGSWSGAVT*(-)
MQFMLSVPLLRRSLPFNSKMTFFQQWEAGQVLSRKLMLSLVADFQQQKTLALNPKFVDGLRSIL
RNTSLDKEFIAKAITLPGQGEIMDMMPVADPDAVHAVRTFIKKELALQLKDDLLSTVGSWSGAV
T*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021