Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d037532_circ_g.10 |
ID in PlantcircBase | zma_circ_009045 |
Alias | Zm06circ00058, GRMZM2G021846_C5 |
Organism | Zea mays |
Position | chr6: 128417353-128418072 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d037532 |
Parent gene annotation |
6-phosphofructo-2-kinase/fructose-26-bisphosphatase |
Parent gene strand | + |
Alternative splicing | Zm00001d037532_circ_g.7 Zm00001d037532_circ_g.8 Zm00001d037532_circ_g.9 |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d037532_T001:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.180506227 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
128417551-128418069(+) |
Potential amino acid sequence |
MTYEEIKKIMPEEFESRKKDKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVISHQIWTST LQRTILTASPIVGFPKIQWRALDEINSGVCDGMTYEEIKKIMPEEFESRKKDKLRYRYPRGESY LDVIQRLEPVIIELERQRAPVVVISHQIWTSTLQRTILTASPIVGFPKIQWRALDEINSGVCDG MTYEEIKKIMPEEFESRKKDKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVISHQIWTST LQRTILTASPIVGFPKIQWRALDEINSGVCDGMTYEEIKKIMPEEFESRKKDKLRYRYPRGESY LDVIQRLEPVIIELERQRAPVVVISHQ(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Han et al., 2020;Zhang et al., 2019 |