Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G10670_circ_g.9 |
ID in PlantcircBase | ath_circ_001954 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 3536829-3537811 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | PcircRNA_finder |
Parent gene | AT1G10670 |
Parent gene annotation |
ATP-citrate lyase A-1 |
Parent gene strand | + |
Alternative splicing | AT1G10670_circ_g.1 AT1G10670_circ_g.2 AT1G10670_circ_g.3 AT1G10670_circ_g.4 AT1G10670_circ_g.5 AT1G10670_circ_g.6 AT1G10670_circ_g.7 AT1G10670_circ_g.8 AT1G10670_circ_g.10 AT1G10670_circ_g.11 |
Support reads | 2 |
Tissues | whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G10670.1:6 AT1G10670.4:6 AT1G10670.3:6 AT1G10670.2:6 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.187084652 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
3536997-3537808(+) |
Potential amino acid sequence |
MNPFTLVDGSPYPLDMRGELDDTAAFKNFKKWGDIEFPLPFGRVMSPTESFIHGLDEKTSASLK FTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPKEDEVLQYARVVIDCATA NPDGKSRALVIGGGIANFTDVAATFNGIIRALKEKIKAEIEEFIKVIFTLFQDLDFTFLEMNPF TLVDGSPYPLDMRGELDDTAAFKNFKKWGDIEFPLPFGRVMSPTESFIHGLDEKTSASLKFTVL NPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPKEDEVLQYARVVIDCATANPDG KSRALVIGGGIANFTDVAATFNGIIRALKEKIKAEIEEFIKVIFTLFQDLDFTFLEMNPFTLVD GSPYPLDMRGELDDTAAFKNFKKWGDIEFPLPFGRVMSPTESFIHGLDEKTSASLKFTVLNPKG RIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPKEDEVLQYARVVIDCATANPDGKSRA LVIGGGIANFTDVAATFNGIIRALKEKIKAEIEEFIKVIFTLFQDLDFTFLEMNPFTLVDGSPY PLDMRGELDDTAAFKNFKKWGDIEFPLPFGRVMSPTESFIHGLDEKTSASLKFTVLNPKGRIWT MVAGGGASVIYADTVGDLGYASELGNYAEYSGAPKEDEVLQYARVVIDCATANPDGKSRALVIG GGIANFTDVAATFNGIIRALKEK(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |