Detail information of AT1G27900_circ_g.3


General Information
CircRNA Name AT1G27900_circ_g.3
ID in PlantcircBase ath_circ_004598
Alias NA
Organism Arabidpsis thaliana
Position chr1: 9716634-9716956  JBrowse»
Reference genome TAIR10.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene AT1G27900
Parent gene annotation Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEA
H4
Parent gene strand -
Alternative splicing AT1G27900_circ_g.2
Support reads 2
Tissues seedlings
Exon boundary   No-No
Splicing signals   CT-TT
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTGAAGTAACAATGCAGTAAGGCTTTTGATGTCACCATGCTTTTCACTTGGAATACTCGAGAA
TAGATAAGGAAGGAAGGAAGAAAATGGAACAATTACatctttcttattggcataaggaacccac
gtaataatgtaccgaaatagactatctaaacaaaggtagtaaatttcagtaactcccataattg
ttggttat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATCTTTCTTATTGGCATAAGGAACCCACGTAATAATGTACCGAAATAGACTATCTAAACAAAGG
TAGTAAATTTCAGTAACTCCCATAATTGTTGGTTATAAAACTGTATGAAGCAGAAAATACAAAC
ATTGACGCCCATCGGAGTCAGGTCTCAACAATGAAGGGATTTTCTATGCTATATAGATTGTATT
AACTGCAGAGACAGCATATAACTGACCACCTTCTGAAGTAACAATGCAGTAAGGCTTTTGATGT
CACCATGCTTTTCACTTGGAATACTCGAGAATAGATAAGGAAGGAAGGAAGAAAATGGAACAAT
TAC
Conservation Information
Conserved circRNAs NA
PMCS 0.127485139
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Pan et al., 2017