Plant Circular RNA Database

Detail information of Os05g0530500_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os05g0530500_circ_g.2
					
						ID in PlantcircBase
						osa_circ_028621
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr5: 26347914-26349530  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os05g0530500						
					
						Parent gene annotation
						
							Similar to OSK1. (Os05t0530500-01);Serine/threonine protein kina
se, Sugar signaling (Os05t0530500-02);Similar to OSK1. (Os05t053
0500-03)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os05g0530500_circ_g.3 Os05g0530500_circ_g.4 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os05t0530500-01:5
Os05t0530500-03:5
Os05t0530500-02:7

General Information
CircRNA Name	Os05g0530500_circ_g.2
ID in PlantcircBase	osa_circ_028621
Alias	NA
Organism	Oryza sativa
Position	chr5: 26347914-26349530 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os05g0530500
Parent gene annotation	Similar to OSK1. (Os05t0530500-01);Serine/threonine protein kina se, Sugar signaling (Os05t0530500-02);Similar to OSK1. (Os05t053 0500-03)
Parent gene strand	-
Alternative splicing	Os05g0530500_circ_g.3 Os05g0530500_circ_g.4
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os05t0530500-01:5 Os05t0530500-03:5 Os05t0530500-02:7

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CAATCTTAACATTGCATTTGGAGTCCAAAAGAAGGTTCTCTGGCTTAAGATCACGATGAACCAC
CATGTTTCTATGGCAATATTCAACACCAGATATGATctgaatttcaaatttcacagtgtgggtt
gatttctcactgtcatcagtttcaattatagcagattctgcaccaaagccatggttgttatgca
tcatactc

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTGAATTTCAAATTTCACAGTGTGGGTTGATTTCTCACTGTCATCAGTTTCAATTATAGCAGAT
TCTGCACCAAAGCCATGGTTGTTATGCATCATACTCTCATGACTGGGAAAACTAGGACTCCATC
TGCATTTCATGTTATAATGTCCAATCTTCTTCCAGCAAACATTTAGCTCTTGCAGAGCTTTAAG
AACTTCAGTTATTATTTCTCGTGGATGTGCTCGAGACTGTTAAATAAATACAGACAAATGAATT
AGGATAACTTATAATAAATAAAGTGAATAAATAAGAACCTTATAGTAACAGCATAAAACCTGAA
GACCAAGGGCCCATTTCCTGTCAGCTGCGAAATGATGCCTCAAGCCAAACCCAGGAGATTCCAT
ATGCCCATGCTGCCGATGATCAGTGGCTGAGTTTGGTGTCTCAGCTGGAGTTACTTGAGCGAGA
GAAGATTCCTGGATCACAGAAAGCAAAGCACCAAATTATCATAAACTTTGTAGTGCTACAGGGA
ACAGCACATTTGCCAGGAATTTGGAATCAATAGAAAGCAATAAATGAGAGAGAGAGATGAGTTG
ACATACCATAGATTCATGGAACTCAGCTCCAAGGTAGCCACTGGTTGTGCGCAGCCTATTGTCC
AATAGTAAATAGTAGGCAACTGTCGCCTGCACATTATTCAGAAACTTTGTCATGCATTCCCCAA
GAAACAACAAAGAGGAGCAATGGAGTGAAGCAAACACCTCGTTTTGCAGTCTCTTGTGAAGTGA
TTCGATTAGCTGATTCTTGTCAAACCCCATATTGATAACATCATTCAGAGTTTCATCGTCGAGC
TACAAAACTCACATTGATCAAATCAAACACTGAAAGTTTCAAAAGCAGAATACGGCTTTAAATA
GTTAGATGCATAATGGCAGCATGTTACCTTTTTAACCTGTTGTGCAGTGTCAGGAGGTGGCACA
GCTAAATAACGCGGAAGACCAACTGTGAACCACTGATGTTCACGGATTTCACGTATGGTGATCC
TCTTCATGGGATCAACAACAAGCATTCTGGGAATCAAATCCCTTGCCAAAGGTGACAAATGACT
GGGAAGGGTATATATGCCACCCTAGAACATCAAAACGGACAGAGTTTTACTTTAACATATAAAA
GGAGATGAGGCAGCACCTTTATCAGTAGGATATATCACATCTTTGCTAACCTTTATTTTCTTAA
AAAGGTTGGGAATATTCTCGTCATCAAATGGAAGGGTACCACAAAGAAGAGCATAAAGAATAAC
ACCACAACTCCACACATCAACTTCAGGGCCAGCATATAGTTTACCAGATATCACCTAGTCAAAT
GGAAAAGGAATTGAAAAAGGTAAAGAAAGATAGAAGCAATTATGCAATCATGAAGAAGGAGTAA
TAATGCAAATCATTCAAGATAAATACCTCAGGTGCTGCATAATTTGGGCTACCACAACTTGTCT
TCAGAAAGTGACCATCACGCATAACATTACTCAAGCCAAAGTCTGCAATCTTAACATTGCATTT
GGAGTCCAAAAGAAGGTTCTCTGGCTTAAGATCACGATGAACCACCATGTTTCTATGGCAATAT
TCAACACCAGATATGAT
						
					

			
		

Sequences
Splice junction sequence	CAATCTTAACATTGCATTTGGAGTCCAAAAGAAGGTTCTCTGGCTTAAGATCACGATGAACCAC CATGTTTCTATGGCAATATTCAACACCAGATATGATctgaatttcaaatttcacagtgtgggtt gatttctcactgtcatcagtttcaattatagcagattctgcaccaaagccatggttgttatgca tcatactc
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTGAATTTCAAATTTCACAGTGTGGGTTGATTTCTCACTGTCATCAGTTTCAATTATAGCAGAT TCTGCACCAAAGCCATGGTTGTTATGCATCATACTCTCATGACTGGGAAAACTAGGACTCCATC TGCATTTCATGTTATAATGTCCAATCTTCTTCCAGCAAACATTTAGCTCTTGCAGAGCTTTAAG AACTTCAGTTATTATTTCTCGTGGATGTGCTCGAGACTGTTAAATAAATACAGACAAATGAATT AGGATAACTTATAATAAATAAAGTGAATAAATAAGAACCTTATAGTAACAGCATAAAACCTGAA GACCAAGGGCCCATTTCCTGTCAGCTGCGAAATGATGCCTCAAGCCAAACCCAGGAGATTCCAT ATGCCCATGCTGCCGATGATCAGTGGCTGAGTTTGGTGTCTCAGCTGGAGTTACTTGAGCGAGA GAAGATTCCTGGATCACAGAAAGCAAAGCACCAAATTATCATAAACTTTGTAGTGCTACAGGGA ACAGCACATTTGCCAGGAATTTGGAATCAATAGAAAGCAATAAATGAGAGAGAGAGATGAGTTG ACATACCATAGATTCATGGAACTCAGCTCCAAGGTAGCCACTGGTTGTGCGCAGCCTATTGTCC AATAGTAAATAGTAGGCAACTGTCGCCTGCACATTATTCAGAAACTTTGTCATGCATTCCCCAA GAAACAACAAAGAGGAGCAATGGAGTGAAGCAAACACCTCGTTTTGCAGTCTCTTGTGAAGTGA TTCGATTAGCTGATTCTTGTCAAACCCCATATTGATAACATCATTCAGAGTTTCATCGTCGAGC TACAAAACTCACATTGATCAAATCAAACACTGAAAGTTTCAAAAGCAGAATACGGCTTTAAATA GTTAGATGCATAATGGCAGCATGTTACCTTTTTAACCTGTTGTGCAGTGTCAGGAGGTGGCACA GCTAAATAACGCGGAAGACCAACTGTGAACCACTGATGTTCACGGATTTCACGTATGGTGATCC TCTTCATGGGATCAACAACAAGCATTCTGGGAATCAAATCCCTTGCCAAAGGTGACAAATGACT GGGAAGGGTATATATGCCACCCTAGAACATCAAAACGGACAGAGTTTTACTTTAACATATAAAA GGAGATGAGGCAGCACCTTTATCAGTAGGATATATCACATCTTTGCTAACCTTTATTTTCTTAA AAAGGTTGGGAATATTCTCGTCATCAAATGGAAGGGTACCACAAAGAAGAGCATAAAGAATAAC ACCACAACTCCACACATCAACTTCAGGGCCAGCATATAGTTTACCAGATATCACCTAGTCAAAT GGAAAAGGAATTGAAAAAGGTAAAGAAAGATAGAAGCAATTATGCAATCATGAAGAAGGAGTAA TAATGCAAATCATTCAAGATAAATACCTCAGGTGCTGCATAATTTGGGCTACCACAACTTGTCT TCAGAAAGTGACCATCACGCATAACATTACTCAAGCCAAAGTCTGCAATCTTAACATTGCATTT GGAGTCCAAAAGAAGGTTCTCTGGCTTAAGATCACGATGAACCACCATGTTTCTATGGCAATAT TCAACACCAGATATGAT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.222181323

Conservation Information
Conserved circRNAs	NA
PMCS	0.222181323

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							26349487-26347940(+)
26349499-26347916(-)
						
					

						Potential amino acid sequence
						
							MNHHVSMAIFNTRYDLNFKFHSVG*(+)
MVVHRDLKPENLLLDSKCNVKIADFGLSNVMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDV
WSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPLARDLIPRMLVVDPMKRITIRE
IREHQWFTVGLPRYLAVPPPDTAQQVKKLDDETLNDVINMGFDKNQLIESLHKRLQNEATVAYY
LLLDNRLRTTSGYLGAEFHESMESSLAQVTPAETPNSATDHRQHGHMESPGFGLRHHFAADRKW
ALGLQSRAHPREIITEVLKALQELNVCWKKIGHYNMKCRWSPSFPSHESMMHNNHGFGAESAII
ETDDSEKSTHTVKFEIQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNVMRDGHF
LKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTL
PSHLSPLARDLIPRMLVVDPMKRITIREIREHQWFTVGLPRYLAVPPPDTAQQVKKLDDETLND
VINMGFDKNQLIESLHKRLQNEATVAYYLLLDNRLRTTSGYLGAEFHESMESSLAQVTPAETPN
SATDHRQHGHMESPGFGLRHHFAADRKWALGLQSRAHPREIITEVLKALQELNVCWKKIGHYNM
KCRWSPSFPSHESMMHNNHGFGAESAIIETDDSEKSTHTVKFEIQIISGVEYCHRNMVVHRDLK
PENLLLDSKCNVKIADFGLSNVMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILY
ALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPLARDLIPRMLVVDPMKRITIREIREHQWFT
VGLPRYLAVPPPDTAQQVKKLDDETLNDVINMGFDKNQLIESLHKRLQNEATVAYYLLLDNRLR
TTSGYLGAEFHESMESSLAQVTPAETPNSATDHRQHGHMESPGFGLRHHFAADRKWALGLQSRA
HPREIITEVLKALQELNVCWKKIGHYNMKCRWSPSFPSHESMMHNNHGFGAESAIIETDDSEKS
THTVKFEIQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNVMRDGHFLKTSCGSP
NYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPLA
RDLIPRMLVVDPMKRITIREIREHQWFTVGLPRYLAVPPPDTAQQVKKLDDETLNDVINMGFDK
NQLIESLHKRLQNEATVAYYLLLDNRLRTTSGYLGAEFHESMESSLAQVTPAETPNSATDHRQH
GHMESPGFGLRHHFAADRKWALGLQSRAHPREIITEVLKALQELNVCWKKIGHYNMKCRWSPSF
PSHESMMHNNHGFGAESAIIETDDSEKSTHTVKFEIQ(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	26349487-26347940(+) 26349499-26347916(-)
Potential amino acid sequence	MNHHVSMAIFNTRYDLNFKFHSVG*(+) MVVHRDLKPENLLLDSKCNVKIADFGLSNVMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDV WSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPLARDLIPRMLVVDPMKRITIRE IREHQWFTVGLPRYLAVPPPDTAQQVKKLDDETLNDVINMGFDKNQLIESLHKRLQNEATVAYY LLLDNRLRTTSGYLGAEFHESMESSLAQVTPAETPNSATDHRQHGHMESPGFGLRHHFAADRKW ALGLQSRAHPREIITEVLKALQELNVCWKKIGHYNMKCRWSPSFPSHESMMHNNHGFGAESAII ETDDSEKSTHTVKFEIQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNVMRDGHF LKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTL PSHLSPLARDLIPRMLVVDPMKRITIREIREHQWFTVGLPRYLAVPPPDTAQQVKKLDDETLND VINMGFDKNQLIESLHKRLQNEATVAYYLLLDNRLRTTSGYLGAEFHESMESSLAQVTPAETPN SATDHRQHGHMESPGFGLRHHFAADRKWALGLQSRAHPREIITEVLKALQELNVCWKKIGHYNM KCRWSPSFPSHESMMHNNHGFGAESAIIETDDSEKSTHTVKFEIQIISGVEYCHRNMVVHRDLK PENLLLDSKCNVKIADFGLSNVMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILY ALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPLARDLIPRMLVVDPMKRITIREIREHQWFT VGLPRYLAVPPPDTAQQVKKLDDETLNDVINMGFDKNQLIESLHKRLQNEATVAYYLLLDNRLR TTSGYLGAEFHESMESSLAQVTPAETPNSATDHRQHGHMESPGFGLRHHFAADRKWALGLQSRA HPREIITEVLKALQELNVCWKKIGHYNMKCRWSPSFPSHESMMHNNHGFGAESAIIETDDSEKS THTVKFEIQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNVMRDGHFLKTSCGSP NYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPLA RDLIPRMLVVDPMKRITIREIREHQWFTVGLPRYLAVPPPDTAQQVKKLDDETLNDVINMGFDK NQLIESLHKRLQNEATVAYYLLLDNRLRTTSGYLGAEFHESMESSLAQVTPAETPNSATDHRQH GHMESPGFGLRHHFAADRKWALGLQSRAHPREIITEVLKALQELNVCWKKIGHYNMKCRWSPSF PSHESMMHNNHGFGAESAIIETDDSEKSTHTVKFEIQ(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os05g0530500_circ_g.2

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