Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d047717_circ_g.2 |
ID in PlantcircBase | zma_circ_010055 |
Alias | zma_circ_0003089 |
Organism | Zea mays |
Position | chr9: 139873718-139881066 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d047717 |
Parent gene annotation |
protein_coding |
Parent gene strand | - |
Alternative splicing | Zm00001d047717_circ_g.1 Zm00001d047717_circ_g.3 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d047717_T022:10 Zm00001d047717_T019:8 Zm00001d047717_T014:10 Zm00001d047717_T010:10 Zm00001d047717_T016:10 Zm00001d047717_T004:10 Zm00001d047717_T023:10 Zm00001d047717_T011:10 Zm00001d047717_T001:10 Zm00001d047717_T030:10 Zm00001d047717_T003:10 Zm00001d047717_T007:10 Zm00001d047717_T006:9 Zm00001d047717_T026:5 Zm00001d047717_T031:10 Zm00001d047717_T028:9 Zm00001d047717_T018:9 Zm00001d047717_T017:10 Zm00001d047717_T025:10 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.097221263 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
139880794-139881064(-) |
Potential amino acid sequence |
MKDLFSDETGNYMEAENKYSRAMRGAPADSLFGQFCLHALWFGNCNICAIATLWIDFVREIRWC WEESERLPRMKSTSSIDLSSCLIHQKLQMLTICIERKRSLNREKGTGYKDETSNSTAVNKSRKG SAGVVPKMMLLNTFQEMHAPYTQDAPLMTEDMHEERLHAAEAFGNAIGLSGQLERDILCSDMSA FKAANPDAVFEDFIRWHSPGEWLSEDKTDGNAGWPPKGKLSHRMSQHGNVWRKIWNDALPLPVS EQKSLLDPVREGEKVLHYLETLRPQQLLEQMVCTAFKSSADILNKTMYGGFKEMKTKMDRLYVT MASTLKSFLG*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | regulating the response to N deficiency |
Other Information | |
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References | Ma et al., 2021b |