Detail information of BGIOSGA013887_circ_ig.2


General Information
CircRNA Name BGIOSGA013887_circ_ig.2
ID in PlantcircBase osi_circ_000454
Alias NA
Organism Oryza sativa ssp. indica
Position chr3: 39449170-39450103  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method DCC
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA013887_circ_ig.1 BGIOSGA013887_circ_ig.3 BGIOSGA013887_circ_ig.4 BGIOSGA013887_circ_ig.5
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   AC-TG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTGTTGGTTACTTAATGGAAATTGTGATGGTGAACTGTGTTTTACCCAAATACTTATTAGAAG
TAGTGAGTGAAGCTTTGTTATGTGAATTTTGCTGATtataagtaaaaaaacaacataggagggc
tatgtttttttgttagagtactattgttgctgactagatttcctcctattcattactcatgtac
actgtggc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TATAAGTAAAAAAACAACATAGGAGGGCTATGTTTTTTTGTTAGAGTACTATTGTTGCTGACTA
GATTTCCTCCTATTCATTACTCATGTACACTGTGGCTTTTCATTGTAGAACTGTTTTCTACATG
TTCTTTCTTTTTTAACAACAAAGGGACTGTCTATCTGTTATCCTTTGTATTGTATAATTATCCT
TGGTTCCTTCCAGCCTTCCATATTTAAATCATTTTGAGAAGAATTTAGGAGCTCATATAATATA
CTGTATATATATTGGACCATTTTTTCCAGACTGGTTGGAAATAGGGATTATGTGCATAAAAATG
TGATGGGCTAAATTCAATTTGTATTGGCCAATTGGGCTAAATGGCTTTGAGAGAATGAGGGTTA
CGGGGTCAAATGACTAAAAAAGGAACAAACTTCAGTTGATGGCTACATTTCAACTAAATTAACA
AACTCTAATTCCCAAGTGTTTTAAGGTCAGGTTATAAATCTAATTCCCAAGTGTTTTAAGGTCC
AGTTATAAATTAGTGTTGTATGACAACCCATTAGACAAAATTCAAACAGCTATATGAATCTACT
TTCTTCTGCTCAGGTTATTTATATTTCAAAACTGAATTTCTCTTGGAAGGTCATGTAAAGGTTC
TGTCCTTTCTTGGAGTCCTCCATTCCAAGGTAAACCATCATAGTGCCCAATCTTTTTAAGTCTT
TTATAATTTTAGTAGATAAAAGTCACTTAAGTGAAAATCAGTGTTTTAGCTGATAAGTTGCTAT
ATGGGCTAGTAAAACTTGTCAGATGTGCAACGATCATTAGTCTGTCGGTAAAGAAGCTGGGAAC
TTATTGTTGGTTACTTAATGGAAATTGTGATGGTGAACTGTGTTTTACCCAAATACTTATTAGA
AGTAGTGAGTGAAGCTTTGTTATGTGAATTTTGCTGAT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Guria et al., 2019