Detail information of BGIOSGA034158_circ_g.1


General Information
CircRNA Name BGIOSGA034158_circ_g.1
ID in PlantcircBase osi_circ_009509
Alias Chr11:9895826_9897272(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr11: 8233797-8235243  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ie-circRNA
Identification method CIRI2
Parent gene BGIOSGA034158
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-TA
Number of exons covered BGIOSGA034158-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGACATAAGGTTAAGAGATTCATTTTTGAATACCGTATCATTGAGTCCCGGCAACAAATTAAG
TTTCTTCACAGCAATCTCCTTCCCATTATGTACTCCcctggcccaaaagtgacttgggctgacg
cataaacatgttttcaatctcagcatctaactcgttcagttgatggactatatcatttatcgca
ggcctttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGGCCCAAAAGTGACTTGGGCTGACGCATAAACATGTTTTCAATCTCAGCATCTAACTCGTT
CAGTTGATGGACTATATCATTTATCGCAGGCCTTTTGTCTCGGTTGGCCTCCACACATCTTAAC
GATAATTCAATACATTGTCTCACTGCGAGCATGTCTGCTTCGCGCGATGCATACCTCGATATTC
CCTGCACTCTTTTGTTCCATTTTGCATATACCTGCGAAAGACATAATTTTCAAACACGCTCATA
GAAAATTAAAGCACTTACGGAATGTATCACAAAATGTTTGAAATGAATATTAGTTTCAATGGTG
TAGACATAAAAGAAATTTCTTACATAATCAACAAATTCTTGGGTGGACGACATGTCACAACACT
GTCTGTAGCCGTCAATTCCAGCGATTATCTGTATAATTATGACGCCCAAACTGAATACGTCAAA
CTTCTTAGTGATTTTTCCTTGGTCTATGAATTCTGGTGGCATGTATCCTCTGCATGATACCATA
AACATTGTGGAATTTGTTACGGAAACGTATTTTGCTCCTAAATACACTACCGCACAAAATAATA
TATCAATACGGCTGGTTCATAACCATCATCTCTTGCACTGTCAAATCAGCAATAATTTAAGTCA
TATGATTTTTCGCAAGAAATAGTCGTGTGAGTACTATTTTGACGTTTTGTGTTTTAAATTGATA
GCTAGCCCAAATTGTAGTCGGCGGATTTGTGGAAAAAAACTTGTCTTACATACCCAATCTAATA
TATATATCTGGAAAAATAAGCATTGAGCAATAATGATAAGTTATCCGCAGTTCTTATTGAATTC
TCGAGGTAAGAGGGCTACATACGAATTGTCTGCTTACCTTGTTCCATTCACAGTTTTCGTTATA
TGTGTTTTTGTCGATTCAAAGAGTCTGGACAAGCCAAAATCTGCAATTTTCGGTGCCATGTTCT
CATCTAACAATATATTTTCGGGCTTTAAGTCCAGATGGTAAATAGGCTTTTCTTGTCCATTGTG
AAGATAATTTAATCCCTCGCAAGCCCCTTTAATTATTCTGTACCTCGTGGTCCAGTCAAGTCCA
CCACCAGATTCATCTGCAAAATGTAAAAGGTGTTTTCACCGAGACTTAAACATGTAATCATTTC
TTTGCACACTACTAAATTAATTAATTAGATGGTACGTACCAGAAATAAAATTTGCTAGGTTTCC
ACGCTTCAAATATTCGAAGCAGATAACTCGCTCACTTATTTCAGCATAAGTAAGTTTGCCATTG
TATTCAACAACTTTATTTTTCGTTTCATAGCAGTAGCCAATTAATTTCACAATATTTTGATGCT
GGACAGACATAAGGTTAAGAGATTCATTTTTGAATACCGTATCATTGAGTCCCGGCAACAAATT
AAGTTTCTTCACAGCAATCTCCTTCCCATTATGTACTCC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021