Detail information of Os02g0632500_circ_g.3


General Information
CircRNA Name Os02g0632500_circ_g.3
ID in PlantcircBase osa_circ_015698
Alias NA
Organism Oryza sativa
Position chr2: 25331066-25335221  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os02g0632500
Parent gene annotation Arf GTPase activating protein family protein. (Os02t0632500-01)
Parent gene strand +
Alternative splicing Os02g0632500_circ_g.1 Os02g0632500_circ_g.2 Os02g0632500_circ_g.4 Os02g0632500_circ_g.5 Os02g0632500_circ_g.6
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os02t0632500-01:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAATGTGGACACATCTACCAGTGGTGATGGTATCCATGTTGTTGGTCTTCAATCCTATAAAAAG
ATTGAAGCCCTAATGCAGTCAACTGCCAATGGCGAGgggatcacttgatgaaggatacgcggga
gatctaacatttgccgatgctctagaagcatttggtgctggtcaagatgatcctgttagtgttg
ccattgga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGGATCACTTGATGAAGGATACGCGGGAGATCTAACATTTGCCGATGCTCTAGAAGCATTTGGT
GCTGGTCAAGATGATCCTGTTAGTGTTGCCATTGGAGGTTAATTTCATCAAATCTCTGTTATAT
CTGTTGCTTAATTTTTCCTGGTTTCCCATCCATAGATAGCTAAACAACTGAGTCCATCCTTGCC
AATTGCTAAACATCTTGCCACGTTGGTGTCCTTTTGTCTCCTATCGATTATGTACCACATCTTT
AATTTTATGTCTGTTCCCTCTCTTAAGGAAAGATCACAGTAACAGATCATTAGAATATATATAA
ATGCAGACATAAGCAAGCACATACTATGTACTTCTTTTATTTTACTTATTAATATGTTGTAGGC
TTGTAGTATGATAACACAATGTTTCTTAACTGTAATGGTTTAATGCAATGCCATTTCACTGAAA
TTATGGAATGCAAATTTGTTAATAAAGTGAAGTTCATGAACACATTCAGCTTTCAATGTGGAAG
ATCCAAATTCTGAATTCTGTTGCAGGGCCTGTAATGTCCAAGTTCACTACTGCTTTTAGGGAGC
TTGGAACATACAAGGAACTCCTTCGTTCTCAGGTAAAATCTATTCTATGCCATTGAATTCTTTA
TGTACTACTCCCTCTGTCCCACAAAATATGGAATCCTGGATTCCCAATGCAAATTTAGTAATAA
CATAGAAAGACCAAAGTGCCCTCATTACTACATTCATTCATCCACCCATTAATTCACACAGCAC
ATACTATAAGAAAAAAAAAGAGGCATCTGGCACAAAAATAAGCGCCAAAAATTTGAAATTTTCT
AGTACCTGCAGAAAGAAAAGAGAACATCTCCCATCTGAAAAAAATAAATGCTGGCAAGAAATGC
TCTTATTTAACCTGCAAAAATTAACAAGAACCAAGAACAGAGAAGAGAAAGGTTGTCCGCCTTC
ACCAAGGTGGCAGTCATCCACGGTGCGCCTAAGGGCAAGAAGAATTCAATACAGTTAACAAGGT
CGAAGGGCAGAAAGAAACCTCGGTGGAAAAGAAGAATAGATGGAAAAAGAATACAAATGGGGTT
CATTCTAATGGCACGCTTCTCGAACTCATTGACCACCTCAGTGCTGGGAGATCCACGGGCGCCT
CCCTCTCCGCGGCGGCACCCGAGCTGCATTCCATCTAACGTCGTTGCCAGCATCGGATTTGCCT
CTTGCGAATCTCCTCTGCACCGCATCCATCCGCCACCGATGCAGCCGTCACATCCAGGTTGCAG
CATCAGGGTGGACGCATAAGGTCGTCGGGAGGAGCGAGAGGGGAGCGCGAGACAGTGGCGCAGT
GGGCATGGGGATGGAGATGGAGATGGAGATCGTTGGAGCGCCGCATTGATGAACGGGCGAGACG
ATGGTGAATGAGAGAGACTCGAGCGAGATGGGTGTGTGCCTGGGAAGAGATAAGGTCCTTCTCG
ACCACCGATGTGAAGTAGTCAGTCATTGAATGTTTCACTTTTTTGTGTACAGATCGTTTTTTTT
TCTGGGACCCTCCTCCAGAAATCCTTTTTGTGGGACGGAGGGAGTAATTGGCACCCTGTGCGCT
GCAACACGCTGATCAATTGTTAATATGAAAAATTAGCTGGGTGATGGAACGAAAAAAAGAGCAT
AGCATAGTAACATTTTTCATTTTGATACATTCTGATTGCATTGGTGAAAGAATGTGCATTTAAT
TTTAGATAAAAAATGCTTCCTGTCCAAATTTGAACTGCAATAAATAGGACTCTACATAAAGATT
GTCCAGTTTCATCATAACATAAATGTTCCATGAAATACAAATCGAAGTGAATGTACCTCCTTCA
ATTGCTTAATGCAAACACTTGGAAACAAGAAAAAAATAAGTAAGATATATTCAATTGTTTGTTT
CCAAATCTGTAGTTTTGTGACAAGACTCAGTTGATTCTGACTCACCAAAGCATTCAACGGGAGG
AAGCATAGGGGAGAGGAATGAGGTGGGTATTATGACCTGTGATTATTGTAGTATTTGATGGGAT
GATAAACTCAAGCATACGTGCGGTACTTCTCTGGTAGACCCATGGTGTTGGGTGTCAAGGTGTG
GAGGACTTGTGGGCTACGCATTATGCCAGACATGGAGCACCAGAGTGAGGGCAGGTGTGCGCTG
AGGAACGGAGGAAGGCATATAGTAGGGGATGGACGCTGAAGATGCAGATTAAATTCCTCACATC
CTACCTTGTCTGCACCAGTGCGGTCCACTCAGATTCCTTGCCATTGCATCAGCGGTTACAGAAG
AGGATGTGATGATGATTGATTAGTGAGAGGATGAGAGAATGGAGCATGTAAGGAAGCGTGGTAG
TTGGGCCGGATCATTTGCAGGTTGATGACTTAATCAGGAATTTTTGGAACATGTAGGTTTTTTG
CATGGCATATACAAATTGAGGTGACATGGCACGATGAGAGTAGAGGAAAATAGCTTTAATTGCA
GTTAGTGGGAATGAACTTTATAGGTACATAGGATTCTCCTTCTCCATATGTTGTTTCATACGTC
CATGTCACTCATCGGTAATGAAATTGAAAAGTAAGATTGCTGAATGGGACTAGGAGTTCCCTTT
TGATGCAAATAACACTGTGACACTGTAAAAGGGTTATTTGCAAAGAAGAACCGTTTTTGTTCTT
TTTATTTTTACTAGCTTAACAGATTGAATCTCTATCATTCTAATCAGTATGTGTCCTCAACCAG
GTTGATCATATGCTTAGTGAACGTTTGATGCAATTCATTGATGTGGATTTGCATGGCGTGAAGG
TGAGGGTGACAACCTCCTGCCCCAAAAAATTAAGCACACTACTGAGATCTGTATTTATGTAGGT
AGTACCTCAGGTTTTGCTCTTCTTCATGGATACTTGCTTGCGTGCTTGACTTTTTGTTGGATCC
GAATTTCAAGCCTTTTGCTTCTGACAATGAAAAAATTGCATGAAGTGATCTTAGAAATGTAGTT
CGAGTTTCACTGACTTCCATTTTGGGTAATGGGAACAATATATGGATGTCCTTCTGTCTTAAAT
ACAATACACCTGCCCTACTGTCTTGATGTTCATGTGGAAGTTTTTAACACATTAATTAGTTAAT
ACTATAGGCTAACATCCTGCACTGTATATAGGATTGTCGTCAGCGTTTGGATAGGGCTACAGTG
GGGTATGATCAGGTGATATCTTGCACTCTAGCTATGTGATTACCTAGTTTTCAATTTGCATATT
TCTTCATTTTGGCATGTGGTGCCCTATAAGAATATATGTTGCTATCTTGCTTGTCAGGCACGTG
AAAAATTTGTATCAGTACGGAAAGGGACTAGAGCAGAAGTAGTGACAGGACTTGAGGAGGTGAA
CAGGGACAACTTGTTTTTTTTTCCGTAAGTGATCATTTATTTAATTTCTATACAACATCTCTAA
TTCCAAATTTGCAGGATCTACACAATGCCAAGTCAGCTTTCGAACGATGCCGCTTTAACCTAGT
ATGTATGAACATTTTTTTATATAGTGTTGCTAATTTTATTGATTTTGCCAAGCCAATAATTCTC
CTTGGCTGTAAGGAATTCAGGTGCACGCACTTTCAAATATTGAAGCAAAGAAGAAGTATGAGTT
CTTGGAATCAATAAGTGCAGTGATGGATGCCCATTTGAGATATTTCAAGCAGGCATGGTCACTC
TATAATTCGATTGATTATTATTGTTTGGTTTATTGGGTTCTTCTTGATTTTGTTCTTTATGATC
TAGGGATATGAACTACTGAGTCAAATGGAACCATTCATTCACCAGGTTTAGTAATCTCTTATCT
GACCTATTGGTCTTAAACCGATGAACATTTATTTCAATCAGCATGGATCCATTGACCATAAGTT
AACCATTAATATGCTAACTGTAAGGTTTTGATACAGGTTCTAACATATGCACAGCAATCAAAAG
AAATGGCTATCAATGAACAAGATAAACTTGCAAAGAGAATTCAAGAATATAGGACTCAAGAGGA
AATTGCGAACTTGAGAATGGCTAGTAATGTGGACACATCTACCAGTGGTGATGGTATCCATGTT
GTTGGTCTTCAATCCTATAAAAAGATTGAAGCCCTAATGCAGTCAACTGCCAATGGCGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.137709791
Functional Information
Coding potential Y
Potential coding position 25331612-25331074(+)
25335215-25331074(+)
25331126-25335178(-)
Potential amino acid sequence MSKFTTAFRELGTYKELLRSQVDHMLSERLMQFIDVDLHGVKDCRQRLDRATVGYDQAREKFVS
VRKGTRAEVVTGLEEDLHNAKSAFERCRFNLVHALSNIEAKKKYEFLESISAVMDAHLRYFKQG
YELLSQMEPFIHQVLTYAQQSKEMAINEQDKLAKRIQEYRTQEEIANLRMASNVDTSTSGDGIH
VVGLQSYKKIEALMQSTANGEGIT*(+)
MARGSLDEGYAGDLTFADALEAFGAGQDDPVSVAIGGPVMSKFTTAFRELGTYKELLRSQVDHM
LSERLMQFIDVDLHGVKDCRQRLDRATVGYDQAREKFVSVRKGTRAEVVTGLEEDLHNAKSAFE
RCRFNLVHALSNIEAKKKYEFLESISAVMDAHLRYFKQGYELLSQMEPFIHQVLTYAQQSKEMA
INEQDKLAKRIQEYRTQEEIANLRMASNVDTSTSGDGIHVVGLQSYKKIEALMQSTANGEGIT*
(+)
MLLEHRQMLDLPRILHQVIPSPLAVDCIRASIFL*(-)
Sponge-miRNAs osa-miR419
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017