Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os02g0632500_circ_g.3 |
ID in PlantcircBase | osa_circ_015698 |
Alias | NA |
Organism | Oryza sativa |
Position | chr2: 25331066-25335221 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os02g0632500 |
Parent gene annotation |
Arf GTPase activating protein family protein. (Os02t0632500-01) |
Parent gene strand | + |
Alternative splicing | Os02g0632500_circ_g.1 Os02g0632500_circ_g.2 Os02g0632500_circ_g.4 Os02g0632500_circ_g.5 Os02g0632500_circ_g.6 |
Support reads | 1 |
Tissues | shoot |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os02t0632500-01:9 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.137709791 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
25331612-25331074(+) 25335215-25331074(+) 25331126-25335178(-) |
Potential amino acid sequence |
MSKFTTAFRELGTYKELLRSQVDHMLSERLMQFIDVDLHGVKDCRQRLDRATVGYDQAREKFVS VRKGTRAEVVTGLEEDLHNAKSAFERCRFNLVHALSNIEAKKKYEFLESISAVMDAHLRYFKQG YELLSQMEPFIHQVLTYAQQSKEMAINEQDKLAKRIQEYRTQEEIANLRMASNVDTSTSGDGIH VVGLQSYKKIEALMQSTANGEGIT*(+) MARGSLDEGYAGDLTFADALEAFGAGQDDPVSVAIGGPVMSKFTTAFRELGTYKELLRSQVDHM LSERLMQFIDVDLHGVKDCRQRLDRATVGYDQAREKFVSVRKGTRAEVVTGLEEDLHNAKSAFE RCRFNLVHALSNIEAKKKYEFLESISAVMDAHLRYFKQGYELLSQMEPFIHQVLTYAQQSKEMA INEQDKLAKRIQEYRTQEEIANLRMASNVDTSTSGDGIHVVGLQSYKKIEALMQSTANGEGIT* (+) MLLEHRQMLDLPRILHQVIPSPLAVDCIRASIFL*(-) |
Sponge-miRNAs | osa-miR419 |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |