Plant Circular RNA Database

Detail information of Os05g0390100_circ_g.3

			
						 General Information
					
						CircRNA Name
						Os05g0390100_circ_g.3
					
						ID in PlantcircBase
						osa_circ_027757
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr5: 18896373-18899604  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os05g0390100						
					
						Parent gene annotation
						
							Dynamin family protein. (Os05t0390100-01)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os05g0390100_circ_g.1 Os05g0390100_circ_g.2 Os05g0390100_circ_g.4 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os05t0390100-01:6

General Information
CircRNA Name	Os05g0390100_circ_g.3
ID in PlantcircBase	osa_circ_027757
Alias	NA
Organism	Oryza sativa
Position	chr5: 18896373-18899604 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os05g0390100
Parent gene annotation	Dynamin family protein. (Os05t0390100-01)
Parent gene strand	+
Alternative splicing	Os05g0390100_circ_g.1 Os05g0390100_circ_g.2 Os05g0390100_circ_g.4
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os05t0390100-01:6

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TGAACTTGTCAATGAAGAAGAGAAACTCTGTGTAAAGGCACTGGATGGCTTCAGTGCTAGTGCT
GCTGCTAAGGTTTTTGAAGAAGAAATTCGTGAAGTGggtgaatttaattcgggaaaatcaactt
ttataaatgctctacttgggaggaagtatcttcaggaaggagttgtgcccacaacaaatgagat
catgttgc

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1260
Transcript exons: 18896373-18896570,18897036-18897167,18897903-18897989,18
898090-18898533,18898889-18899056,18899374-18899604
GGTGAATTTAATTCGGGAAAATCAACTTTTATAAATGCTCTACTTGGGAGGAAGTATCTTCAGG
AAGGAGTTGTGCCCACAACAAATGAGATCATGTTGCTATCATATTCTGATGTTGACTCTGAAAG
CGCAGAACGATGTGAGAGGCACCCGGATGGTCAATACATGTGCTATTTATCGGCACCCGTATTG
AAGGAAATGAACCTAGTTGATACGCCTGGAACAAATGTTATTCTCCAAAGGCAGCAACGGCTTA
CTGAAGAATATGTGCCCCGAGCTGACCTAATACTCTTTGTTCTTTCATCAGACAGACCATTGAC
TGACAGTGAGGTCGGATTTCTCCAGTATGTTCAGCAGTGGAAGAAGAAAGTTGTATTTGTACTA
AACAAATTGGACCTTTATCGGAACAGTAACGAGCTTGAAGAGGCTACTGCATTTATCAAGGAAA
ATGCAAGAAAATTGCTTAACACAGAGGATGTGACATTATTTCCTGTATCTTCACGCTCTGCTCT
GGAGGCCAAGCTTTTGTATTCAAAAAATGATGGAAGAGAGCATCATGGGGAAGCTTTGTTTAAT
GACCCTAGATGGAGAAACAGCAAGTTTTATGATCTAGAGCATTACCTATTGAGCTTCTTGGATG
GATCAACAGAAAATGGGAAGGAAAGGGTCCGGCTGAAACTTGAAACGCCAATTGGAATTGCAGA
TCGTTTGCTAACGTCATGTCAAAGGCTTGTGAAGCTAGAATATGAAAAGGCTATTGATGACCTA
ACATCCATCAAGGATCTTGTTTCTGGTGCAAACAATTATGCTGTGAAGATTGAGGCTGACAGTG
ATTCTTGGCAAAGGCAGATTTCATCCCTTATTGCGAGAGCTAAAGGCCGAGCAATTTCGCTCAT
GGAATCTACACTTCAGTTGTCAAACATTGACCTTATTTTTACATACACCCTTTCAGGGGGGAAA
AGCACTCCCACCAAAGTTACATCATTTTTTCAAAATGATATTCTGAGCCCTTCCCTTGATGACG
CAGCAAATTTGCTAAGTGAATATTCTACATGGTTGAGTTCTACCAATGTCCGTGAAGCAAATAT
ATATGTGGACTGCTTCCATGAGAGATGGGGTGCATTGGTTGCCCAGGAGCAAAGGATTCCGCCA
GAGAAAAATGAACTTGTCAATGAAGAAGAGAAACTCTGTGTAAAGGCACTGGATGGCTTCAGTG
CTAGTGCTGCTGCTAAGGTTTTTGAAGAAGAAATTCGTGAAGTG
						
					

						Genomic sequence
						
							GGTGAATTTAATTCGGGAAAATCAACTTTTATAAATGCTCTACTTGGGAGGAAGTATCTTCAGG
AAGGAGTTGTGCCCACAACAAATGAGATCATGTTGCTATCATATTCTGATGTTGACTCTGAAAG
CGCAGAACGATGTGAGAGGCACCCGGATGGTCAATACATGTGCTATTTATCGGCACCCGTATTG
AAGGAAGTAAGTACATAGTTGATGTCTTGATGCTACCCTTTCACCCTTTACTGTATTTGGTTGA
ACAAGCTAGCTACGCCAGGATGGTTATCATGATGTAAGGAAACATAATATTTTTCAACTACTTG
AAGGCTGCTTTCTCTATGAATCTCAAAGAAATATTTGTTCTAAGGAAGCATTCGAGTTAATGAA
TATGTATGAAATAGAGGAATACAACTCTTTCCTCTACAAAATGCTGTAGTTTTAGCATGTACAA
CCTGTCTGTTAGCTGTTTACTGACTTTTTATGGGTCTGCATTCGCTATAATTGAGAGGGATTTC
AAAAAATAAATGGCAGTCGTCTTCCACCTTATTTCCCCTTAGTGTTTCTGGGTTACATTAATGT
TACAATGCCAACTTACTGGTGCAATTTTCTTGACTCATGACTTCATCTCCATGGCTGTGAGATG
TTTAATTGTGTACTATTGAACAGATGAACCTAGTTGATACGCCTGGAACAAATGTTATTCTCCA
AAGGCAGCAACGGCTTACTGAAGAATATGTGCCCCGAGCTGACCTAATACTCTTTGTTCTTTCA
TCAGACAGACCATTGACTGACAGTGAGGTAATGATTATGATTATTTGATTGTGCCAATTCTTTA
TGCATTTGATAGTCATTATCTCACCACTATGTTTTAGGAATGGTAGGTAGAAAGCATGAAACAA
TAAAAAAAATGAGTCAAATCCTATAATAGATCATTTGTTGAATGTGCCCCATTTTTATTTCCTC
TGCATGGATAACTGAATAATCTCTTGATTTGTATTTGGTTCTAGTTCTTTACAATTATGAAATT
AATCAAAAGGGAAGGATTGTCTGTATGACTTGTCTAAGTTCCTGGGATCGGTGGGTTTAAAATA
TAATCTCCCAGGGCGATTAACTCAATGCATCCTTTTATCATGCATTGGCAATTTAGCATGCTGC
ACTTCCTTAGGAAAGTGCCTGTTGCCTGTTGCCTAAATTATTGCAGAACACACTTCCTTGGCCC
CAACCTATGATATGCATTCTGTCTCACATTTTTTATGTAGTTTGGTACACTTATTTGAATACTG
ACTAAAGACTTAAATTTTCACACCCAAGTTTATTTTTTGAGGAACGTGATATTGTGGCCATCTG
TGACGAGCCTTTTTAAACTTATAGATTGCATATTGCTTAGGATTTTATCCTTATGCGATTCCTT
ACCTAACAAATATTTTATTGAAAATTCTATAATCCTTATTTATCTCTCAAGGATGCAGTTTTGT
CCTTGGTCCTTTATTATTTGTCCTTTACAGTGGAGCTAAAAACGTTCTTGACTTCTAGGTCGGA
TTTCTCCAGTATGTTCAGCAGTGGAAGAAGAAAGTTGTATTTGTACTAAACAAATTGGACCTTT
ATCGGAACAGTAACGAGGTCTGATATAAATCTCTAGTTCAAAATCCCTGCAAAATATTGCCTAT
CCTATTTACCTTTTTCCTGATTGCTATTTTGCTTCTCAATCCAACGGTTTTAGCTTGAAGAGGC
TACTGCATTTATCAAGGAAAATGCAAGAAAATTGCTTAACACAGAGGATGTGACATTATTTCCT
GTATCTTCACGCTCTGCTCTGGAGGCCAAGCTTTTGTATTCAAAAAATGATGGAAGAGAGCATC
ATGGGGAAGCTTTGTTTAATGACCCTAGATGGAGAAACAGCAAGTTTTATGATCTAGAGCATTA
CCTATTGAGCTTCTTGGATGGATCAACAGAAAATGGGAAGGAAAGGGTCCGGCTGAAACTTGAA
ACGCCAATTGGAATTGCAGATCGTTTGCTAACGTCATGTCAAAGGCTTGTGAAGCTAGAATATG
AAAAGGCTATTGATGACCTAACATCCATCAAGGATCTTGTTTCTGGTGCAAACAATTATGCTGT
GAAGATTGAGGCTGACAGTGATTCTTGGCAAAGGCAGATTTCATCCCTTGTAGGTTTTCTGAAG
ATGACTATTTCTGTTTTACCCTTATGTTCTTCAATTCTACTATGATATATTCCCTATTTGCAAC
CATAAGGCATACATAGTAGTTAGCTTTGATGCAAAATAAGAGAAAACATACAAATAATGGTGTT
TTTCCTGCTGGTTTTTCATTTTTTCTCCCTGAAGTTTATGCGAACAAAAGAGTGAAAGTCTTCC
TCTCCTTTCTAAGGAAATTATGAGGGGTGGTTTAGTTTTTCTTCCAGTGGCATGTGCTTCAGTT
GAGATATCTTTAGTCCATATGTAATACTGTATAGTTGACAAATGTCTTAACCTGTTGCATTGAT
ATTTTCTTTTTATCTTGCAGATTGCGAGAGCTAAAGGCCGAGCAATTTCGCTCATGGAATCTAC
ACTTCAGTTGTCAAACATTGACCTTATTTTTACATACACCCTTTCAGGGGGGAAAAGCACTCCC
ACCAAAGTTACATCATTTTTTCAAAATGATATTCTGAGCCCTTCCCTTGATGACGCAGCAGTAT
GTTGAACACTCTTCTCATTTACATATCATATTAAAAATTTTCTTTCTACATGTTTGTATTTTCC
ACATTTTCTTGCACATGTCATTCAGACAAAAATTGCCCAGGTTTGTTGCAAACAATTCAGATAC
ATAAATATCACGAGAAAATTGAGTAGTGGGCATCATTAACTCCTGGTGTCTGGTTCATATTTGT
TCATGCCTGTTACTCCTATTTGTTTAAAAGATTTCTAACATTTGCTTCATGTTGGTTATTTATT
TGCATTGTGGTGCTTATTTGTTTGTGTTATCAACAAAACTTTCTTTCTTTTGTCTAGAATTTGC
TAAGTGAATATTCTACATGGTTGAGTTCTACCAATGTCCGTGAAGCAAATATATATGTGGACTG
CTTCCATGAGAGATGGGGTGCATTGGTTGCCCAGGAGCAAAGGATTCCGCCAGAGAAAAATGAA
CTTGTCAATGAAGAAGAGAAACTCTGTGTAAAGGCACTGGATGGCTTCAGTGCTAGTGCTGCTG
CTAAGGTTTTTGAAGAAGAAATTCGTGAAGTG
						
					

			
		

Sequences
Splice junction sequence	TGAACTTGTCAATGAAGAAGAGAAACTCTGTGTAAAGGCACTGGATGGCTTCAGTGCTAGTGCT GCTGCTAAGGTTTTTGAAGAAGAAATTCGTGAAGTGggtgaatttaattcgggaaaatcaactt ttataaatgctctacttgggaggaagtatcttcaggaaggagttgtgcccacaacaaatgagat catgttgc
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1260 Transcript exons: 18896373-18896570,18897036-18897167,18897903-18897989,18 898090-18898533,18898889-18899056,18899374-18899604 GGTGAATTTAATTCGGGAAAATCAACTTTTATAAATGCTCTACTTGGGAGGAAGTATCTTCAGG AAGGAGTTGTGCCCACAACAAATGAGATCATGTTGCTATCATATTCTGATGTTGACTCTGAAAG CGCAGAACGATGTGAGAGGCACCCGGATGGTCAATACATGTGCTATTTATCGGCACCCGTATTG AAGGAAATGAACCTAGTTGATACGCCTGGAACAAATGTTATTCTCCAAAGGCAGCAACGGCTTA CTGAAGAATATGTGCCCCGAGCTGACCTAATACTCTTTGTTCTTTCATCAGACAGACCATTGAC TGACAGTGAGGTCGGATTTCTCCAGTATGTTCAGCAGTGGAAGAAGAAAGTTGTATTTGTACTA AACAAATTGGACCTTTATCGGAACAGTAACGAGCTTGAAGAGGCTACTGCATTTATCAAGGAAA ATGCAAGAAAATTGCTTAACACAGAGGATGTGACATTATTTCCTGTATCTTCACGCTCTGCTCT GGAGGCCAAGCTTTTGTATTCAAAAAATGATGGAAGAGAGCATCATGGGGAAGCTTTGTTTAAT GACCCTAGATGGAGAAACAGCAAGTTTTATGATCTAGAGCATTACCTATTGAGCTTCTTGGATG GATCAACAGAAAATGGGAAGGAAAGGGTCCGGCTGAAACTTGAAACGCCAATTGGAATTGCAGA TCGTTTGCTAACGTCATGTCAAAGGCTTGTGAAGCTAGAATATGAAAAGGCTATTGATGACCTA ACATCCATCAAGGATCTTGTTTCTGGTGCAAACAATTATGCTGTGAAGATTGAGGCTGACAGTG ATTCTTGGCAAAGGCAGATTTCATCCCTTATTGCGAGAGCTAAAGGCCGAGCAATTTCGCTCAT GGAATCTACACTTCAGTTGTCAAACATTGACCTTATTTTTACATACACCCTTTCAGGGGGGAAA AGCACTCCCACCAAAGTTACATCATTTTTTCAAAATGATATTCTGAGCCCTTCCCTTGATGACG CAGCAAATTTGCTAAGTGAATATTCTACATGGTTGAGTTCTACCAATGTCCGTGAAGCAAATAT ATATGTGGACTGCTTCCATGAGAGATGGGGTGCATTGGTTGCCCAGGAGCAAAGGATTCCGCCA GAGAAAAATGAACTTGTCAATGAAGAAGAGAAACTCTGTGTAAAGGCACTGGATGGCTTCAGTG CTAGTGCTGCTGCTAAGGTTTTTGAAGAAGAAATTCGTGAAGTG
Genomic sequence	GGTGAATTTAATTCGGGAAAATCAACTTTTATAAATGCTCTACTTGGGAGGAAGTATCTTCAGG AAGGAGTTGTGCCCACAACAAATGAGATCATGTTGCTATCATATTCTGATGTTGACTCTGAAAG CGCAGAACGATGTGAGAGGCACCCGGATGGTCAATACATGTGCTATTTATCGGCACCCGTATTG AAGGAAGTAAGTACATAGTTGATGTCTTGATGCTACCCTTTCACCCTTTACTGTATTTGGTTGA ACAAGCTAGCTACGCCAGGATGGTTATCATGATGTAAGGAAACATAATATTTTTCAACTACTTG AAGGCTGCTTTCTCTATGAATCTCAAAGAAATATTTGTTCTAAGGAAGCATTCGAGTTAATGAA TATGTATGAAATAGAGGAATACAACTCTTTCCTCTACAAAATGCTGTAGTTTTAGCATGTACAA CCTGTCTGTTAGCTGTTTACTGACTTTTTATGGGTCTGCATTCGCTATAATTGAGAGGGATTTC AAAAAATAAATGGCAGTCGTCTTCCACCTTATTTCCCCTTAGTGTTTCTGGGTTACATTAATGT TACAATGCCAACTTACTGGTGCAATTTTCTTGACTCATGACTTCATCTCCATGGCTGTGAGATG TTTAATTGTGTACTATTGAACAGATGAACCTAGTTGATACGCCTGGAACAAATGTTATTCTCCA AAGGCAGCAACGGCTTACTGAAGAATATGTGCCCCGAGCTGACCTAATACTCTTTGTTCTTTCA TCAGACAGACCATTGACTGACAGTGAGGTAATGATTATGATTATTTGATTGTGCCAATTCTTTA TGCATTTGATAGTCATTATCTCACCACTATGTTTTAGGAATGGTAGGTAGAAAGCATGAAACAA TAAAAAAAATGAGTCAAATCCTATAATAGATCATTTGTTGAATGTGCCCCATTTTTATTTCCTC TGCATGGATAACTGAATAATCTCTTGATTTGTATTTGGTTCTAGTTCTTTACAATTATGAAATT AATCAAAAGGGAAGGATTGTCTGTATGACTTGTCTAAGTTCCTGGGATCGGTGGGTTTAAAATA TAATCTCCCAGGGCGATTAACTCAATGCATCCTTTTATCATGCATTGGCAATTTAGCATGCTGC ACTTCCTTAGGAAAGTGCCTGTTGCCTGTTGCCTAAATTATTGCAGAACACACTTCCTTGGCCC CAACCTATGATATGCATTCTGTCTCACATTTTTTATGTAGTTTGGTACACTTATTTGAATACTG ACTAAAGACTTAAATTTTCACACCCAAGTTTATTTTTTGAGGAACGTGATATTGTGGCCATCTG TGACGAGCCTTTTTAAACTTATAGATTGCATATTGCTTAGGATTTTATCCTTATGCGATTCCTT ACCTAACAAATATTTTATTGAAAATTCTATAATCCTTATTTATCTCTCAAGGATGCAGTTTTGT CCTTGGTCCTTTATTATTTGTCCTTTACAGTGGAGCTAAAAACGTTCTTGACTTCTAGGTCGGA TTTCTCCAGTATGTTCAGCAGTGGAAGAAGAAAGTTGTATTTGTACTAAACAAATTGGACCTTT ATCGGAACAGTAACGAGGTCTGATATAAATCTCTAGTTCAAAATCCCTGCAAAATATTGCCTAT CCTATTTACCTTTTTCCTGATTGCTATTTTGCTTCTCAATCCAACGGTTTTAGCTTGAAGAGGC TACTGCATTTATCAAGGAAAATGCAAGAAAATTGCTTAACACAGAGGATGTGACATTATTTCCT GTATCTTCACGCTCTGCTCTGGAGGCCAAGCTTTTGTATTCAAAAAATGATGGAAGAGAGCATC ATGGGGAAGCTTTGTTTAATGACCCTAGATGGAGAAACAGCAAGTTTTATGATCTAGAGCATTA CCTATTGAGCTTCTTGGATGGATCAACAGAAAATGGGAAGGAAAGGGTCCGGCTGAAACTTGAA ACGCCAATTGGAATTGCAGATCGTTTGCTAACGTCATGTCAAAGGCTTGTGAAGCTAGAATATG AAAAGGCTATTGATGACCTAACATCCATCAAGGATCTTGTTTCTGGTGCAAACAATTATGCTGT GAAGATTGAGGCTGACAGTGATTCTTGGCAAAGGCAGATTTCATCCCTTGTAGGTTTTCTGAAG ATGACTATTTCTGTTTTACCCTTATGTTCTTCAATTCTACTATGATATATTCCCTATTTGCAAC CATAAGGCATACATAGTAGTTAGCTTTGATGCAAAATAAGAGAAAACATACAAATAATGGTGTT TTTCCTGCTGGTTTTTCATTTTTTCTCCCTGAAGTTTATGCGAACAAAAGAGTGAAAGTCTTCC TCTCCTTTCTAAGGAAATTATGAGGGGTGGTTTAGTTTTTCTTCCAGTGGCATGTGCTTCAGTT GAGATATCTTTAGTCCATATGTAATACTGTATAGTTGACAAATGTCTTAACCTGTTGCATTGAT ATTTTCTTTTTATCTTGCAGATTGCGAGAGCTAAAGGCCGAGCAATTTCGCTCATGGAATCTAC ACTTCAGTTGTCAAACATTGACCTTATTTTTACATACACCCTTTCAGGGGGGAAAAGCACTCCC ACCAAAGTTACATCATTTTTTCAAAATGATATTCTGAGCCCTTCCCTTGATGACGCAGCAGTAT GTTGAACACTCTTCTCATTTACATATCATATTAAAAATTTTCTTTCTACATGTTTGTATTTTCC ACATTTTCTTGCACATGTCATTCAGACAAAAATTGCCCAGGTTTGTTGCAAACAATTCAGATAC ATAAATATCACGAGAAAATTGAGTAGTGGGCATCATTAACTCCTGGTGTCTGGTTCATATTTGT TCATGCCTGTTACTCCTATTTGTTTAAAAGATTTCTAACATTTGCTTCATGTTGGTTATTTATT TGCATTGTGGTGCTTATTTGTTTGTGTTATCAACAAAACTTTCTTTCTTTTGTCTAGAATTTGC TAAGTGAATATTCTACATGGTTGAGTTCTACCAATGTCCGTGAAGCAAATATATATGTGGACTG CTTCCATGAGAGATGGGGTGCATTGGTTGCCCAGGAGCAAAGGATTCCGCCAGAGAAAAATGAA CTTGTCAATGAAGAAGAGAAACTCTGTGTAAAGGCACTGGATGGCTTCAGTGCTAGTGCTGCTG CTAAGGTTTTTGAAGAAGAAATTCGTGAAGTG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.335370078

Conservation Information
Conserved circRNAs	NA
PMCS	0.335370078

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							18896467-18899601(+)
18899550-18896403(+)
						
					

						Potential amino acid sequence
						
							MLLSYSDVDSESAERCERHPDGQYMCYLSAPVLKEMNLVDTPGTNVILQRQQRLTEEYVPRADL
ILFVLSSDRPLTDSEVGFLQYVQQWKKKVVFVLNKLDLYRNSNELEEATAFIKENARKLLNTED
VTLFPVSSRSALEAKLLYSKNDGREHHGEALFNDPRWRNSKFYDLEHYLLSFLDGSTENGKERV
RLKLETPIGIADRLLTSCQRLVKLEYEKAIDDLTSIKDLVSGANNYAVKIEADSDSWQRQISSL
IARAKGRAISLMESTLQLSNIDLIFTYTLSGGKSTPTKVTSFFQNDILSPSLDDAANLLSEYST
WLSSTNVREANIYVDCFHERWGALVAQEQRIPPEKNELVNEEEKLCVKALDGFSASAAAKVFEE
EIREVGEFNSGKSTFINALLGRKYLQEGVVPTTNEIMLLSYSDVDSESAERCERHPDGQYMCYL
SAPVLKEMNLVDTPGTNVILQRQQRLTEEYVPRADLILFVLSSDRPLTDSEVGFLQYVQQWKKK
VVFVLNKLDLYRNSNELEEATAFIKENARKLLNTEDVTLFPVSSRSALEAKLLYSKNDGREHHG
EALFNDPRWRNSKFYDLEHYLLSFLDGSTENGKERVRLKLETPIGIADRLLTSCQRLVKLEYEK
AIDDLTSIKDLVSGANNYAVKIEADSDSWQRQISSLIARAKGRAISLMESTLQLSNIDLIFTYT
LSGGKSTPTKVTSFFQNDILSPSLDDAANLLSEYSTWLSSTNVREANIYVDCFHERWGALVAQE
QRIPPEKNELVNEEEKLCVKALDGFSASAAAKVFEEEIREVGEFNSGKSTFINALLGRKYLQEG
VVPTTNEIMLLSYSDVDSESAERCERHPDGQYMCYLSAPVLKEMNLVDTPGTNVILQRQQRLTE
EYVPRADLILFVLSSDRPLTDSEVGFLQYVQQWKKKVVFVLNKLDLYRNSNELEEATAFIKENA
RKLLNTEDVTLFPVSSRSALEAKLLYSKNDGREHHGEALFNDPRWRNSKFYDLEHYLLSFLDGS
TENGKERVRLKLETPIGIADRLLTSCQRLVKLEYEKAIDDLTSIKDLVSGANNYAVKIEADSDS
WQRQISSLIARAKGRAISLMESTLQLSNIDLIFTYTLSGGKSTPTKVTSFFQNDILSPSLDDAA
NLLSEYSTWLSSTNVREANIYVDCFHERWGALVAQEQRIPPEKNELVNEEEKLCVKALDGFSAS
AAAKVFEEEIREVGEFNSGKSTFINALLGRKYLQEGVVPTTNEIMLLSYSDVDSESAERCERHP
DGQYMCYLSAPVLKEMNLVDTPGTNVILQRQQRLTEEYVPRADLILFVLSSDRPLTDSEVGFLQ
YVQQWKKKVVFVLNKLDLYRNSNELEEATAFIKENARKLLNTEDVTLFPVSSRSALEAKLLYSK
NDGREHHGEALFNDPRWRNSKFYDLEHYLLSFLDGSTENGKERVRLKLETPIGIADRLLTSCQR
LVKLEYEKAIDDLTSIKDLVSGANNYAVKIEADSDSWQRQISSLIARAKGRAISLMESTLQLSN
IDLIFTYTLSGGKSTPTKVTSFFQNDILSPSLDDAANLLSEYSTWLSSTNVREANIYVDCFHER
WGALVAQEQRIPPEKNELVNEEEKLCVKALDGFSASAAAKVFEEEIREV(+)
MASVLVLLLRFLKKKFVKWVNLIRENQLL*(+)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	18896467-18899601(+) 18899550-18896403(+)
Potential amino acid sequence	MLLSYSDVDSESAERCERHPDGQYMCYLSAPVLKEMNLVDTPGTNVILQRQQRLTEEYVPRADL ILFVLSSDRPLTDSEVGFLQYVQQWKKKVVFVLNKLDLYRNSNELEEATAFIKENARKLLNTED VTLFPVSSRSALEAKLLYSKNDGREHHGEALFNDPRWRNSKFYDLEHYLLSFLDGSTENGKERV RLKLETPIGIADRLLTSCQRLVKLEYEKAIDDLTSIKDLVSGANNYAVKIEADSDSWQRQISSL IARAKGRAISLMESTLQLSNIDLIFTYTLSGGKSTPTKVTSFFQNDILSPSLDDAANLLSEYST WLSSTNVREANIYVDCFHERWGALVAQEQRIPPEKNELVNEEEKLCVKALDGFSASAAAKVFEE EIREVGEFNSGKSTFINALLGRKYLQEGVVPTTNEIMLLSYSDVDSESAERCERHPDGQYMCYL SAPVLKEMNLVDTPGTNVILQRQQRLTEEYVPRADLILFVLSSDRPLTDSEVGFLQYVQQWKKK VVFVLNKLDLYRNSNELEEATAFIKENARKLLNTEDVTLFPVSSRSALEAKLLYSKNDGREHHG EALFNDPRWRNSKFYDLEHYLLSFLDGSTENGKERVRLKLETPIGIADRLLTSCQRLVKLEYEK AIDDLTSIKDLVSGANNYAVKIEADSDSWQRQISSLIARAKGRAISLMESTLQLSNIDLIFTYT LSGGKSTPTKVTSFFQNDILSPSLDDAANLLSEYSTWLSSTNVREANIYVDCFHERWGALVAQE QRIPPEKNELVNEEEKLCVKALDGFSASAAAKVFEEEIREVGEFNSGKSTFINALLGRKYLQEG VVPTTNEIMLLSYSDVDSESAERCERHPDGQYMCYLSAPVLKEMNLVDTPGTNVILQRQQRLTE EYVPRADLILFVLSSDRPLTDSEVGFLQYVQQWKKKVVFVLNKLDLYRNSNELEEATAFIKENA RKLLNTEDVTLFPVSSRSALEAKLLYSKNDGREHHGEALFNDPRWRNSKFYDLEHYLLSFLDGS TENGKERVRLKLETPIGIADRLLTSCQRLVKLEYEKAIDDLTSIKDLVSGANNYAVKIEADSDS WQRQISSLIARAKGRAISLMESTLQLSNIDLIFTYTLSGGKSTPTKVTSFFQNDILSPSLDDAA NLLSEYSTWLSSTNVREANIYVDCFHERWGALVAQEQRIPPEKNELVNEEEKLCVKALDGFSAS AAAKVFEEEIREVGEFNSGKSTFINALLGRKYLQEGVVPTTNEIMLLSYSDVDSESAERCERHP DGQYMCYLSAPVLKEMNLVDTPGTNVILQRQQRLTEEYVPRADLILFVLSSDRPLTDSEVGFLQ YVQQWKKKVVFVLNKLDLYRNSNELEEATAFIKENARKLLNTEDVTLFPVSSRSALEAKLLYSK NDGREHHGEALFNDPRWRNSKFYDLEHYLLSFLDGSTENGKERVRLKLETPIGIADRLLTSCQR LVKLEYEKAIDDLTSIKDLVSGANNYAVKIEADSDSWQRQISSLIARAKGRAISLMESTLQLSN IDLIFTYTLSGGKSTPTKVTSFFQNDILSPSLDDAANLLSEYSTWLSSTNVREANIYVDCFHER WGALVAQEQRIPPEKNELVNEEEKLCVKALDGFSASAAAKVFEEEIREV(+) MASVLVLLLRFLKKKFVKWVNLIRENQLL*(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os05g0390100_circ_g.3

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