Plant Circular RNA Database

Detail information of Os07g0137900_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os07g0137900_circ_g.2
					
						ID in PlantcircBase
						osa_circ_032716
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr7: 1997932-1999457  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os07g0137900						
					
						Parent gene annotation
						
							Similar to Grb10 interacting GYF protein 2. (Os07t0137900-01);Hy
pothetical conserved gene. (Os07t0137900-02)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os07g0137900_circ_g.3 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os07t0137900-01:4

General Information
CircRNA Name	Os07g0137900_circ_g.2
ID in PlantcircBase	osa_circ_032716
Alias	NA
Organism	Oryza sativa
Position	chr7: 1997932-1999457 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os07g0137900
Parent gene annotation	Similar to Grb10 interacting GYF protein 2. (Os07t0137900-01);Hy pothetical conserved gene. (Os07t0137900-02)
Parent gene strand	+
Alternative splicing	Os07g0137900_circ_g.3
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os07t0137900-01:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TATCTTACTGATTGAATTCTCACTCTTTAATTAGATGGTAGAGAAGATCAACAAGGAGGCATGG
AAGATGTCAAGGGAGAAACAGCTGCAAGTCTCAGGGacaagcaaggactggatactgagatgcc
tctttctcctcaatggcttatgaaggtgggagaaaacaaggttagacattgagaagctaggtta
ataactag

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							ACAAGCAAGGACTGGATACTGAGATGCCTCTTTCTCCTCAATGGCTTATGAAGGTGGGAGAAAA
CAAGGTTAGACATTGAGAAGCTAGGTTAATAACTAGACTTAGGGAACTGGTCATGCTAATACTA
TACATGATGGTTGTAACAGTAGGATACCTTTTAAGTGTATAATAACCTCTCTTATTAGTTATTT
TTTGCTTGTCTATACTGAAGATCGTTGATTGCTTGTGGCAGGAACCCAGTTTACTGGGTGTTCG
TTCAGATGGTTCAAAGATACCAGGAAATGATGAGGACACAAGCTTCAGTGTGAAAAGAAAGGAT
GTTTTCAGGGCCTCTGTGCTTGATGGTGAAACTGGGTGTCGTGAACGCTGGCGTGATGATGAAA
GAGAACCAAATTCAGCCCCTCGGTGGAATCGCTGGAGGGAGACAGACAAGGAACATGGTGATAC
ACGCAAACTGGAAAGGTGGTCAGATGACTCCTCCAAGTACTCTGTGGATGGTCGTCGTCCTCCA
CAGGAACGTTGGAGTGACTCCGGTAACAAGGAGGGAAACTATGATCAACGCCGTGATAACAAAT
GGAGTGCTCGTAGGGGCCCTAATGATAAGGAGTCTGAGAATTGGCGTGACAGATGGGGTGATTC
AGGCAAAGATGGTGATGCTGCCCGTGAAAAAGGTTTCTCTCACTACATAGCTCATGGAAAAGAC
GGCAACAGTCATGAGAAGGATGCTGAAAGAGATGATAATATTTCTAGATCATGGAAATCTAGTT
ATCCTGTGGGCCGTGGACGGGGAGATTCATCTCATCATCCCTCACAGAATACACAAAAATCATC
TGCAACATATGGATATGGTAGAGGGAAGCCAGACAATGAAATTGCAAGTTTTCCAGGTTCTCGT
GGAAAATTTACATCTGGAAGTACAAACACAGCCAGTTCAGGATCATCACGTCCATTCCATCTTG
GCCTACTTTCTGACAGGCCTGGTGGTACATCAGGAGATCGCACAGCATTTAGATATAGTAGAAT
GAAACTGCTTGACATATACAGAACTTCTCATGTTACTGACTTCAAGATGCCCCTTGGTGGCTGT
GAGGAACTCTCTGCATTTATGCAAGAAGAAACTTTGGAACCTTTAGCATTGTCTGCTCCTACTA
CTGATGAAGCGGTAATTTTATGCTATAATTTTCTCAAGTGGGATGATCTCATTATTGCAGTACA
GTTTCTTATCTCACAGTTCTATTTATGTTTTTAGGCCATCTTAAAAGCAATTGATAAAGGGGAT
ATCATAAACAGTGGCGTCCATCAGGCTTCCAAAGATGGCCCGGTTGGAAAAAGTAATCCTGAAT
TTCCCCATTAAAACAACCAAAATCATGTTTTCAGCAGTTTGTTTATGTTGTTGTGTACTACTAA
CATATGAAAATATTTTTTTATCTTACTGATTGAATTCTCACTCTTTAATTAGATGGTAGAGAAG
ATCAACAAGGAGGCATGGAAGATGTCAAGGGAGAAACAGCTGCAAGTCTCAGGG
						
					

			
		

Sequences
Splice junction sequence	TATCTTACTGATTGAATTCTCACTCTTTAATTAGATGGTAGAGAAGATCAACAAGGAGGCATGG AAGATGTCAAGGGAGAAACAGCTGCAAGTCTCAGGGacaagcaaggactggatactgagatgcc tctttctcctcaatggcttatgaaggtgggagaaaacaaggttagacattgagaagctaggtta ataactag
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	ACAAGCAAGGACTGGATACTGAGATGCCTCTTTCTCCTCAATGGCTTATGAAGGTGGGAGAAAA CAAGGTTAGACATTGAGAAGCTAGGTTAATAACTAGACTTAGGGAACTGGTCATGCTAATACTA TACATGATGGTTGTAACAGTAGGATACCTTTTAAGTGTATAATAACCTCTCTTATTAGTTATTT TTTGCTTGTCTATACTGAAGATCGTTGATTGCTTGTGGCAGGAACCCAGTTTACTGGGTGTTCG TTCAGATGGTTCAAAGATACCAGGAAATGATGAGGACACAAGCTTCAGTGTGAAAAGAAAGGAT GTTTTCAGGGCCTCTGTGCTTGATGGTGAAACTGGGTGTCGTGAACGCTGGCGTGATGATGAAA GAGAACCAAATTCAGCCCCTCGGTGGAATCGCTGGAGGGAGACAGACAAGGAACATGGTGATAC ACGCAAACTGGAAAGGTGGTCAGATGACTCCTCCAAGTACTCTGTGGATGGTCGTCGTCCTCCA CAGGAACGTTGGAGTGACTCCGGTAACAAGGAGGGAAACTATGATCAACGCCGTGATAACAAAT GGAGTGCTCGTAGGGGCCCTAATGATAAGGAGTCTGAGAATTGGCGTGACAGATGGGGTGATTC AGGCAAAGATGGTGATGCTGCCCGTGAAAAAGGTTTCTCTCACTACATAGCTCATGGAAAAGAC GGCAACAGTCATGAGAAGGATGCTGAAAGAGATGATAATATTTCTAGATCATGGAAATCTAGTT ATCCTGTGGGCCGTGGACGGGGAGATTCATCTCATCATCCCTCACAGAATACACAAAAATCATC TGCAACATATGGATATGGTAGAGGGAAGCCAGACAATGAAATTGCAAGTTTTCCAGGTTCTCGT GGAAAATTTACATCTGGAAGTACAAACACAGCCAGTTCAGGATCATCACGTCCATTCCATCTTG GCCTACTTTCTGACAGGCCTGGTGGTACATCAGGAGATCGCACAGCATTTAGATATAGTAGAAT GAAACTGCTTGACATATACAGAACTTCTCATGTTACTGACTTCAAGATGCCCCTTGGTGGCTGT GAGGAACTCTCTGCATTTATGCAAGAAGAAACTTTGGAACCTTTAGCATTGTCTGCTCCTACTA CTGATGAAGCGGTAATTTTATGCTATAATTTTCTCAAGTGGGATGATCTCATTATTGCAGTACA GTTTCTTATCTCACAGTTCTATTTATGTTTTTAGGCCATCTTAAAAGCAATTGATAAAGGGGAT ATCATAAACAGTGGCGTCCATCAGGCTTCCAAAGATGGCCCGGTTGGAAAAAGTAATCCTGAAT TTCCCCATTAAAACAACCAAAATCATGTTTTCAGCAGTTTGTTTATGTTGTTGTGTACTACTAA CATATGAAAATATTTTTTTATCTTACTGATTGAATTCTCACTCTTTAATTAGATGGTAGAGAAG ATCAACAAGGAGGCATGGAAGATGTCAAGGGAGAAACAGCTGCAAGTCTCAGGG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.198675606

Conservation Information
Conserved circRNAs	NA
PMCS	0.198675606

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							1999247-1997979(+)
1997956-1999454(+)
						
					

						Potential amino acid sequence
						
							MARLEKMVEKINKEAWKMSREKQLQVSGTSKDWILRCLFLLNGL*(+)
MPLSPQWLMKVGENKEPSLLGVRSDGSKIPGNDEDTSFSVKRKDVFRASVLDGETGCRERWRDD
EREPNSAPRWNRWRETDKEHGDTRKLERWSDDSSKYSVDGRRPPQERWSDSGNKEGNYDQRRDN
KWSARRGPNDKESENWRDRWGDSGKDGDAAREKGFSHYIAHGKDGNSHEKDAERDDNISRSWKS
SYPVGRGRGDSSHHPSQNTQKSSATYGYGRGKPDNEIASFPGSRGKFTSGSTNTASSGSSRPFH
LGLLSDRPGGTSGDRTAFRYSRMKLLDIYRTSHVTDFKMPLGGCEELSAFMQEETLEPLALSAP
TTDEAAILKAIDKGDIINSGVHQASKDGPVGKNGREDQQGGMEDVKGETAASLRDKQGLDTEMP
LSPQWLMKVGENKEPSLLGVRSDGSKIPGNDEDTSFSVKRKDVFRASVLDGETGCRERWRDDER
EPNSAPRWNRWRETDKEHGDTRKLERWSDDSSKYSVDGRRPPQERWSDSGNKEGNYDQRRDNKW
SARRGPNDKESENWRDRWGDSGKDGDAAREKGFSHYIAHGKDGNSHEKDAERDDNISRSWKSSY
PVGRGRGDSSHHPSQNTQKSSATYGYGRGKPDNEIASFPGSRGKFTSGSTNTASSGSSRPFHLG
LLSDRPGGTSGDRTAFRYSRMKLLDIYRTSHVTDFKMPLGGCEELSAFMQEETLEPLALSAPTT
DEAAILKAIDKGDIINSGVHQASKDGPVGKNGREDQQGGMEDVKGETAASLRDKQGLDTEMPLS
PQWLMKVGENKEPSLLGVRSDGSKIPGNDEDTSFSVKRKDVFRASVLDGETGCRERWRDDEREP
NSAPRWNRWRETDKEHGDTRKLERWSDDSSKYSVDGRRPPQERWSDSGNKEGNYDQRRDNKWSA
RRGPNDKESENWRDRWGDSGKDGDAAREKGFSHYIAHGKDGNSHEKDAERDDNISRSWKSSYPV
GRGRGDSSHHPSQNTQKSSATYGYGRGKPDNEIASFPGSRGKFTSGSTNTASSGSSRPFHLGLL
SDRPGGTSGDRTAFRYSRMKLLDIYRTSHVTDFKMPLGGCEELSAFMQEETLEPLALSAPTTDE
AAILKAIDKGDIINSGVHQASKDGPVGKNGREDQQGGMEDVKGETAASLRDKQGLDTEMPLSPQ
WLMKVGENKEPSLLGVRSDGSKIPGNDEDTSFSVKRKDVFRASVLDGETGCRERWRDDEREPNS
APRWNRWRETDKEHGDTRKLERWSDDSSKYSVDGRRPPQERWSDSGNKEGNYDQRRDNKWSARR
GPNDKESENWRDRWGDSGKDGDAAREKGFSHYIAHGKDGNSHEKDAERDDNISRSWKSSYPVGR
GRGDSSHHPSQNTQKSSATYGYGRGKPDNEIASFPGSRGKFTSGSTNTASSGSSRPFHLGLLSD
RPGGTSGDRTAFRYSRMKLLDIYRTSHVTDFKMPLGGCEELSAFMQEETLEPLALSAPTTDEAA
ILKAIDKGDIINSGVHQASKDGPVGKNGREDQQGGMEDVKGETAASLR(+)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	1999247-1997979(+) 1997956-1999454(+)
Potential amino acid sequence	MARLEKMVEKINKEAWKMSREKQLQVSGTSKDWILRCLFLLNGL*(+) MPLSPQWLMKVGENKEPSLLGVRSDGSKIPGNDEDTSFSVKRKDVFRASVLDGETGCRERWRDD EREPNSAPRWNRWRETDKEHGDTRKLERWSDDSSKYSVDGRRPPQERWSDSGNKEGNYDQRRDN KWSARRGPNDKESENWRDRWGDSGKDGDAAREKGFSHYIAHGKDGNSHEKDAERDDNISRSWKS SYPVGRGRGDSSHHPSQNTQKSSATYGYGRGKPDNEIASFPGSRGKFTSGSTNTASSGSSRPFH LGLLSDRPGGTSGDRTAFRYSRMKLLDIYRTSHVTDFKMPLGGCEELSAFMQEETLEPLALSAP TTDEAAILKAIDKGDIINSGVHQASKDGPVGKNGREDQQGGMEDVKGETAASLRDKQGLDTEMP LSPQWLMKVGENKEPSLLGVRSDGSKIPGNDEDTSFSVKRKDVFRASVLDGETGCRERWRDDER EPNSAPRWNRWRETDKEHGDTRKLERWSDDSSKYSVDGRRPPQERWSDSGNKEGNYDQRRDNKW SARRGPNDKESENWRDRWGDSGKDGDAAREKGFSHYIAHGKDGNSHEKDAERDDNISRSWKSSY PVGRGRGDSSHHPSQNTQKSSATYGYGRGKPDNEIASFPGSRGKFTSGSTNTASSGSSRPFHLG LLSDRPGGTSGDRTAFRYSRMKLLDIYRTSHVTDFKMPLGGCEELSAFMQEETLEPLALSAPTT DEAAILKAIDKGDIINSGVHQASKDGPVGKNGREDQQGGMEDVKGETAASLRDKQGLDTEMPLS PQWLMKVGENKEPSLLGVRSDGSKIPGNDEDTSFSVKRKDVFRASVLDGETGCRERWRDDEREP NSAPRWNRWRETDKEHGDTRKLERWSDDSSKYSVDGRRPPQERWSDSGNKEGNYDQRRDNKWSA RRGPNDKESENWRDRWGDSGKDGDAAREKGFSHYIAHGKDGNSHEKDAERDDNISRSWKSSYPV GRGRGDSSHHPSQNTQKSSATYGYGRGKPDNEIASFPGSRGKFTSGSTNTASSGSSRPFHLGLL SDRPGGTSGDRTAFRYSRMKLLDIYRTSHVTDFKMPLGGCEELSAFMQEETLEPLALSAPTTDE AAILKAIDKGDIINSGVHQASKDGPVGKNGREDQQGGMEDVKGETAASLRDKQGLDTEMPLSPQ WLMKVGENKEPSLLGVRSDGSKIPGNDEDTSFSVKRKDVFRASVLDGETGCRERWRDDEREPNS APRWNRWRETDKEHGDTRKLERWSDDSSKYSVDGRRPPQERWSDSGNKEGNYDQRRDNKWSARR GPNDKESENWRDRWGDSGKDGDAAREKGFSHYIAHGKDGNSHEKDAERDDNISRSWKSSYPVGR GRGDSSHHPSQNTQKSSATYGYGRGKPDNEIASFPGSRGKFTSGSTNTASSGSSRPFHLGLLSD RPGGTSGDRTAFRYSRMKLLDIYRTSHVTDFKMPLGGCEELSAFMQEETLEPLALSAPTTDEAA ILKAIDKGDIINSGVHQASKDGPVGKNGREDQQGGMEDVKGETAASLR(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os07g0137900_circ_g.2

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