Detail information of AT2G28190_circ_g.3


General Information
CircRNA Name AT2G28190_circ_g.3
ID in PlantcircBase ath_circ_015303
Alias NA
Organism Arabidpsis thaliana
Position chr2: 12016064-12016117  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT2G28190
Parent gene annotation Superoxide dismutase
Parent gene strand +
Alternative splicing NA
Support reads 1
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G28190.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAAACGCAGGCGGGAGATTGGCATGTGgtggccatgagcttagtctgaccactg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGGCCATGAGCTTAGTCTGACCACTGGAAACGCAGGCGGGAGATTGGCATGTG
Conservation Information
Conserved circRNAs NA
PMCS 0.191354941
Functional Information
Coding potential Y
Potential coding position 12016072-12016066(-)
Potential amino acid sequence MATTCQSPACVSSGQTKLMATTCQSPACVSSGQTKLMATTCQSPACVSSGQTKLMA(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017