Detail information of AT2G31970_circ_g.3


General Information
CircRNA Name AT2G31970_circ_g.3
ID in PlantcircBase ath_circ_016020
Alias NA
Organism Arabidpsis thaliana
Position chr2: 13603338-13605907  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT2G31970
Parent gene annotation DNA repair protein RAD50
Parent gene strand +
Alternative splicing NA
Support reads 2
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G31970.1:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAAGGCCAAGGCAGCCAATTTGTTACGGGACGTTACAAAGGCAGAAGAAGACCTGGAGCGTTTA
GCCGAGGAGAAAAGTCAACTTGACCTCGATGTGAAGatgggcatatcaaaacgcatagaagaga
aagaaattgagcgtgattcatttgaattcgaaatttccactgtggatgttaaacaaactgatga
aagagaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATGGGCATATCAAAACGCATAGAAGAGAAAGAAATTGAGCGTGATTCATTTGAATTCGAAATTT
CCACTGTGGATGTTAAACAAACTGATGAAAGAGAGAAACAAGTGGTATTGCTTTCGTCCCTTTA
TTTACTTACATGATTTTGGTCTTGATGACTTTTCCCTTGCTATATGTGCCTTACTTTTTCATCA
TCTGCGTTTGCACAGCAAGTTGAGCTTGAGAGAAAGACAAAACAGAATTCTGAAAGGGGATTTG
AATCCAAAATAGAACAGAAACAGCATGAAATATACAGCTTGGAGCATAAAATCAAGACACTGAA
TCGAGAAAGAGACGTTATGGCTGGTGATGCTGAGGATAGAGTGAAATTGTCTTTAAAGAAGACG
GAACAGGAGAATCTTAAGAAGAAACACAAAAAGATGTGATCTCACTCACCAAAACTTTTCTCAG
TTTTCTGTCTTTTTTTCTATTTATCTATTGTTTTCACTCTCTAAAGCTACTTACCAGAATAGAT
GAGTGCAAGGATCGAATTAGAGGAGTGCTGAAGGGGAGATTACCACCCGAGAAGGATATGAAGA
GGGAAATAGTTCAAGCTTTGAGGTCGTGTTTTCACTTAAGTTATTATTTTTGATGATTCGGAAT
GAATCACTTATTAATATAAGATCTCTTGATCAGCATCTCAAAACAAGAGAATAGCTTGCTACTT
GGTGTTCAAAGTTATCACATCTCAAACATTTCTTTGTATTTGTTTTCTCTTTGGTTTAGGTCAA
TTGAAAGGGAATATGATGACCTCAGTTTGAAATCCCGAGAAGCAGAAAAGGAGGTCAACATGTT
GCAGATGAAGATACAAGAAGTAAACAATAGCCTATTCAAGCATAACAAGGATACAGAATGTAAG
CACTGGTGTATAATTTAAAGTTAGATATCTATTGGTCAGTTCTCTGACTAGCGCCTTAAGTTGT
GAATAAACTGCTCTTGACAATTTTTTCAGTGTTACCAATTATTAGAACATGTTAATATAATGTG
TCATCTGTCACCCCTTTTATTTGATTTTCGTTTCTACAATGTACCTGGATTGACATTTAAAGAC
AGATAAGGAATCCATTTTCGGTGTACAGTGGATGATTAGAAAATATCTATTCACTCAATCTGAC
TTGAGTACTTTTATGCAGCAAGAAAGAGATACATTGAGTCCAAGCTTCAGGCCTTAAAACAGGA
ATCAGTTACCATTGATGCTTATCCCAAATTGTTGGAGTCGGCTAAGGACAAAAGAGATGACCGT
AAACGGTTTGTGGTTAAAACTGGCGACTGTTTCCATACCCCACCCCCTGTATGTTTGCGTGAAT
TCCAATATATTCTTCTCTTGCACTGAAAAGCATAGTTCTGTTTCTGGTCTGTGTTTGCAGCGAA
TATAACATGGCAAATGGTATGCGTCAGATGTTTGAACCTTTTGAGAAACGAGCACGTCAAGAGC
ATTCTTGTCCTTGCTGCGAGCGCTCTTTTACAGCTGATGAAGAGGCTAGCTTTATTAAGAAGGT
TACACAATCTTCTCCTGTTTTTGCCTTAACGATTCAAATTATTTTCTGCTTCTGAAATAACGGA
ATGTCTCTTTATTTGAGTACGTAAATTTCTTTTCAAATACAGCAAAGGGTAAAGGCTTCAAGCA
CAGGGGAGCATCTTAAAGCATTAGCAGTGGAGTCTTCCAATGCTGACTCTGTATTTCAACAGCT
AGACAAACTACGGGCAGTTTTTGAAGAATACTCGAAACTAACTACTGAAATTATTCCTCTCGCT
GAGAAAACTTTGCAAGAGCATACAGAAGAGCTGGGTCAGAAGTCTGAAGCTCTTGATGATGTGA
GTTGGGGATCACTTGTAATTTCCTTGGATAGAACTGATTCGCAGCTGCAAATTCTATCAGTTTC
TTTACAAGTGCAAAGTGTTGCTGTTTTCTGCTTGCTCTGTTTCCTCTTAATCCTGTTGTCATGC
ACATGAGCTGGAATTTTTAATTCCAGTTCATAGCATCTCAAATCATATATGTGTATGTCTTCAG
GTATTAGGAATCTCTGCACAGATAAAAGCTGACAAAGACTCGATTGAAGCACTGGTGCAGCCCC
TCGAAAATGCTGACAGGATCTTTCAGGAAATCGTATCCTACCAAAAGCAAATTGAAGATCTTGA
ATATAAGCTTGATTTTAGGGGTCTTGGGGTTAAAACTATGGAAGAAATCCAATCAGAATTAAGT
AGCCTCCAAAGCAGCAAGTAAGTACTCTGAATTTATGCAGGGTAGAACATATTTCTCTTCCTTG
GACGTTTCTTAGTCTAGCAGACACATAATTTCCAATATTTTCTTCCTTATGTACCCTTGAACAG
GGATAAATTGCACGGTGAGCTGGAGAAACTTAGAGATGACCAGATTTACATGGAACGTGATATA
TCATGCCTCCAGGCCAGATGGCATGCAGTAAGGGAGGAGAAGGCCAAGGCAGCCAATTTGTTAC
GGGACGTTACAAAGGCAGAAGAAGACCTGGAGCGTTTAGCCGAGGAGAAAAGTCAACTTGACCT
CGATGTGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.121752435
Functional Information
Coding potential Y
Potential coding position 13603338-13605904(+)
Potential amino acid sequence MGISKRIEEKEIERDSFEFEISTVDVKQTDEREKQVQVELERKTKQNSERGFESKIEQKQHEIY
SLEHKIKTLNRERDVMAGDAEDRVKLSLKKTEQENLKKKHKKIIDECKDRIRGVLKGRLPPEKD
MKREIVQALRSIEREYDDLSLKSREAEKEVNMLQMKIQEVNNSLFKHNKDTESRKRYIESKLQA
LKQESVTIDAYPKLLESAKDKRDDRKREYNMANGMRQMFEPFEKRARQEHSCPCCERSFTADEE
ASFIKKQRVKASSTGEHLKALAVESSNADSVFQQLDKLRAVFEEYSKLTTEIIPLAEKTLQEHT
EELGQKSEALDDVLGISAQIKADKDSIEALVQPLENADRIFQEIVSYQKQIEDLEYKLDFRGLG
VKTMEEIQSELSSLQSSKDKLHGELEKLRDDQIYMERDISCLQARWHAVREEKAKAANLLRDVT
KAEEDLERLAEEKSQLDLDVKMGISKRIEEKEIERDSFEFEISTVDVKQTDEREKQVQVELERK
TKQNSERGFESKIEQKQHEIYSLEHKIKTLNRERDVMAGDAEDRVKLSLKKTEQENLKKKHKKI
IDECKDRIRGVLKGRLPPEKDMKREIVQALRSIEREYDDLSLKSREAEKEVNMLQMKIQEVNNS
LFKHNKDTESRKRYIESKLQALKQESVTIDAYPKLLESAKDKRDDRKREYNMANGMRQMFEPFE
KRARQEHSCPCCERSFTADEEASFIKKQRVKASSTGEHLKALAVESSNADSVFQQLDKLRAVFE
EYSKLTTEIIPLAEKTLQEHTEELGQKSEALDDVLGISAQIKADKDSIEALVQPLENADRIFQE
IVSYQKQIEDLEYKLDFRGLGVKTMEEIQSELSSLQSSKDKLHGELEKLRDDQIYMERDISCLQ
ARWHAVREEKAKAANLLRDVTKAEEDLERLAEEKSQLDLDVKMGISKRIEEKEIERDSFEFEIS
TVDVKQTDEREKQVQVELERKTKQNSERGFESKIEQKQHEIYSLEHKIKTLNRERDVMAGDAED
RVKLSLKKTEQENLKKKHKKIIDECKDRIRGVLKGRLPPEKDMKREIVQALRSIEREYDDLSLK
SREAEKEVNMLQMKIQEVNNSLFKHNKDTESRKRYIESKLQALKQESVTIDAYPKLLESAKDKR
DDRKREYNMANGMRQMFEPFEKRARQEHSCPCCERSFTADEEASFIKKQRVKASSTGEHLKALA
VESSNADSVFQQLDKLRAVFEEYSKLTTEIIPLAEKTLQEHTEELGQKSEALDDVLGISAQIKA
DKDSIEALVQPLENADRIFQEIVSYQKQIEDLEYKLDFRGLGVKTMEEIQSELSSLQSSKDKLH
GELEKLRDDQIYMERDISCLQARWHAVREEKAKAANLLRDVTKAEEDLERLAEEKSQLDLDVKM
GISKRIEEKEIERDSFEFEISTVDVKQTDEREKQVQVELERKTKQNSERGFESKIEQKQHEIYS
LEHKIKTLNRERDVMAGDAEDRVKLSLKKTEQENLKKKHKKIIDECKDRIRGVLKGRLPPEKDM
KREIVQALRSIEREYDDLSLKSREAEKEVNMLQMKIQEVNNSLFKHNKDTESRKRYIESKLQAL
KQESVTIDAYPKLLESAKDKRDDRKREYNMANGMRQMFEPFEKRARQEHSCPCCERSFTADEEA
SFIKKQRVKASSTGEHLKALAVESSNADSVFQQLDKLRAVFEEYSKLTTEIIPLAEKTLQEHTE
ELGQKSEALDDVLGISAQIKADKDSIEALVQPLENADRIFQEIVSYQKQIEDLEYKLDFRGLGV
KTMEEIQSELSSLQSSKDKLHGELEKLRDDQIYMERDISCLQARWHAVREEKAKAANLLRDVTK
AEEDLERLAEEKSQLDLDVK(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017