Plant Circular RNA Database

Detail information of Os03g0764800_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os03g0764800_circ_g.1
					
						ID in PlantcircBase
						osa_circ_022019
					
						Alias
						Os_ciR8877
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr3: 31654785-31656722  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							Os03g0764800						
					
						Parent gene annotation
						
							Serine/threonine protein kinase, Abscisic acid (ABA)-activated p
rotein kinase, Hyperosmotic stress response, ABA signal transduc
tion (Os03t0764800-01)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os03g0764800_circ_g.2 Os03g0764800_circ_g.3 						
					
						Support reads
						2
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os03t0764800-01:7

General Information
CircRNA Name	Os03g0764800_circ_g.1
ID in PlantcircBase	osa_circ_022019
Alias	Os_ciR8877
Organism	Oryza sativa
Position	chr3: 31654785-31656722 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	find_circ
Parent gene	Os03g0764800
Parent gene annotation	Serine/threonine protein kinase, Abscisic acid (ABA)-activated p rotein kinase, Hyperosmotic stress response, ABA signal transduc tion (Os03t0764800-01)
Parent gene strand	+
Alternative splicing	Os03g0764800_circ_g.2 Os03g0764800_circ_g.3
Support reads	2
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os03t0764800-01:7

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GCGTATCTTGAATGTTCAGTACTCAATTCCAGAAAACGTGGACATATCTCCAGAATGTAGGCAT
CTAATTTCGAGGATTTTTGTCGGGGATCCGTCTTTGatagatgataatgtccagcgtgagatta
taaatcaccgatcgttgaaacatcctaacattattaggtttaaggaggtaagtcaggatcttca
tgacgctc

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 621
Transcript exons: 31654785-31654859,31654947-31655048,31655146-31655199,31
655295-31655387,31655631-31655723,31656414-31656518,3165
6624-31656722
ATAGATGATAATGTCCAGCGTGAGATTATAAATCACCGATCGTTGAAACATCCTAACATTATTA
GGTTTAAGGAGGTTATTTTAACCCCAACTCATCTTGCTATTGTCATGGAATATGCCTCTGGTGG
TGAGCTTTTCGAGAGAATTTGTAAGAATGTACGGTTCAGTGAAGATGAGGCTCGCTACTTCTTC
CAGCAGCTTATCTCGGGAGTCAGCTACTGCCATTCAATGCAAGTATGCCACCGTGATTTGAAGT
TGGAGAATACACTGCTGGATGGAAGCCCTGCTCCACGCTTGAAAATATGTGACTTTGGCTATTC
TAAGTCTTCAGTTCTCCATTCACAACCAAAATCCACTGTAGGAACCCCTGCTTATATTGCACCT
GAAGTTCTGTTGAAGAAAGAATACGATGGCAAGACTGCTGATGTATGGTCCTGTGGTGTGACTC
TATATGTTATGGTAGTTGGTGCATATCCTTTCGAGGATCCAGAAGAGCCTAAGAACTTCCGTAA
AACAATTCAGCGTATCTTGAATGTTCAGTACTCAATTCCAGAAAACGTGGACATATCTCCAGAA
TGTAGGCATCTAATTTCGAGGATTTTTGTCGGGGATCCGTCTTTG
						
					

						Genomic sequence
						
							ATAGATGATAATGTCCAGCGTGAGATTATAAATCACCGATCGTTGAAACATCCTAACATTATTA
GGTTTAAGGAGGTAAGTCAGGATCTTCATGACGCTCATTCTCTAGTTCACCATTCAATATTTTC
CAGCAAAAATAAGTTCTCTATCATGTATCTACAGGTTATTTTAACCCCAACTCATCTTGCTATT
GTCATGGAATATGCCTCTGGTGGTGAGCTTTTCGAGAGAATTTGTAAGAATGTACGGTTCAGTG
AAGATGAGGTACGCACCATTTCCCTGGTGCATCCTCTTTTTGATGCATCTTTCTTGAGTGACAT
ATTGATCGCACTAATTGCATCGGTCTGATTCTACTTTCTAGGCTCGCTACTTCTTCCAGCAGCT
TATCTCGGGAGTCAGCTACTGCCATTCAATGGTATTTCTTATTACAATGATTTTCTTTCATCTG
ATTGTTATTCTGTACTAAGGCATCGTGGTAAGCTGAACTATCCTACTTTCTCCATTTTCAAGCA
AGTATGCCACCGTGATTTGAAGTTGGAGAATACACTGCTGGATGGAAGCCCTGCTCCACGCTTG
AAAATATGTGACTTTGGCTATTCTAAGGTACTTAGCTAATGTTTCTATAATACATTACGGAAGT
CTGTTTTCGGAACAATTCACTAAGCACCATAGGTAAATCCATAATGCTGTTTTCAGAACAATTC
ACTAATCACCATAGGCAAAGTCAGACCAGATTTTGATATGTGTAAATTTCATTTGCTTACAATA
CACTATACTGGCATTACTTTAGGACATTATCTGGTTTACTCTAATAAGCAAATGATAAAAGACA
ATCTTTTTCTGCAGTCTTCAGTTCTCCATTCACAACCAAAATCCACTGTAGGAACCCCTGCTTA
TATTGCACCTGAAGTTCTGTTGAAGAAAGAATACGATGGCAAGGTACATGACTTATTAAGCTTG
TTGATTTAATCCCCGAGAGCAGTACCTTTGGGAGGACTATAGCTTTTCGTCTTGCATCGTATTT
TGACAAACATAAACAATCAATATTTTGGGAGTTGTTTGGTCCCCTGTCCTGCATTCTGTATTTT
CAGTGAAGTACCACCAAAATGCTCTACAAGTTCACACTAAGCTGAGAAAAAATTAGCCATTTTG
TCAAGATTATGTGCCAATCACTTGGCCAAGTTTATCATGTGGTGAGGTCTACAGTGGTGAAATG
GGTTTCCCCTTTTTCTTGTCATTCAAGTATACCTGATTTTTTCCATTGTGGTTGATACACTGGT
CCTTTCCTGGGATGACCACTGAATATGTTTGTTGGTATGCTCTGTTTTAACGTCTGAAAGTGGA
GATGCTGTGCATACCAGTGTTTCTAAAATTGGTAAAACACTGGTTACCGTTCTACTCCCTTCGT
CACAAAACCTGGCTGGGAACCATCCAGAAACTATCTTGTCTTGACTGATTTCTGTTTTAATATA
GTGCCACTGGTGAGATGAATTGAGTGTTCCGTAGAACTCAGGGTAACGTAGGACCTATGTCCCT
TCTTTTTCTTTAAAACAGAAGTATTTCCATTACTGATAACCGCTTAGTGTAGGAATCCTGGCTC
ATACTGATACATTATTTATACTGAAACAGACTGCTGATGTATGGTCCTGTGGTGTGACTCTATA
TGTTATGGTAGTTGGTGCATATCCTTTCGAGGATCCAGAAGAGCCTAAGAACTTCCGTAAAACA
ATTCAGGTTATATAATTTCTTTTCTTATTTCTCTTGCTTTGTTTACATTGGAGCACTTTTTTCA
TCCTTGGCTCTCTGTGAAAAGCTGATGTCAGTGTCATTTTTGTGCAGCGTATCTTGAATGTTCA
GTACTCAATTCCAGAAAACGTGGACATATCTCCAGAATGTAGGCATCTAATTTCGAGGATTTTT
GTCGGGGATCCGTCTTTG
						
					

			
		

Sequences
Splice junction sequence	GCGTATCTTGAATGTTCAGTACTCAATTCCAGAAAACGTGGACATATCTCCAGAATGTAGGCAT CTAATTTCGAGGATTTTTGTCGGGGATCCGTCTTTGatagatgataatgtccagcgtgagatta taaatcaccgatcgttgaaacatcctaacattattaggtttaaggaggtaagtcaggatcttca tgacgctc
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 621 Transcript exons: 31654785-31654859,31654947-31655048,31655146-31655199,31 655295-31655387,31655631-31655723,31656414-31656518,3165 6624-31656722 ATAGATGATAATGTCCAGCGTGAGATTATAAATCACCGATCGTTGAAACATCCTAACATTATTA GGTTTAAGGAGGTTATTTTAACCCCAACTCATCTTGCTATTGTCATGGAATATGCCTCTGGTGG TGAGCTTTTCGAGAGAATTTGTAAGAATGTACGGTTCAGTGAAGATGAGGCTCGCTACTTCTTC CAGCAGCTTATCTCGGGAGTCAGCTACTGCCATTCAATGCAAGTATGCCACCGTGATTTGAAGT TGGAGAATACACTGCTGGATGGAAGCCCTGCTCCACGCTTGAAAATATGTGACTTTGGCTATTC TAAGTCTTCAGTTCTCCATTCACAACCAAAATCCACTGTAGGAACCCCTGCTTATATTGCACCT GAAGTTCTGTTGAAGAAAGAATACGATGGCAAGACTGCTGATGTATGGTCCTGTGGTGTGACTC TATATGTTATGGTAGTTGGTGCATATCCTTTCGAGGATCCAGAAGAGCCTAAGAACTTCCGTAA AACAATTCAGCGTATCTTGAATGTTCAGTACTCAATTCCAGAAAACGTGGACATATCTCCAGAA TGTAGGCATCTAATTTCGAGGATTTTTGTCGGGGATCCGTCTTTG
Genomic sequence	ATAGATGATAATGTCCAGCGTGAGATTATAAATCACCGATCGTTGAAACATCCTAACATTATTA GGTTTAAGGAGGTAAGTCAGGATCTTCATGACGCTCATTCTCTAGTTCACCATTCAATATTTTC CAGCAAAAATAAGTTCTCTATCATGTATCTACAGGTTATTTTAACCCCAACTCATCTTGCTATT GTCATGGAATATGCCTCTGGTGGTGAGCTTTTCGAGAGAATTTGTAAGAATGTACGGTTCAGTG AAGATGAGGTACGCACCATTTCCCTGGTGCATCCTCTTTTTGATGCATCTTTCTTGAGTGACAT ATTGATCGCACTAATTGCATCGGTCTGATTCTACTTTCTAGGCTCGCTACTTCTTCCAGCAGCT TATCTCGGGAGTCAGCTACTGCCATTCAATGGTATTTCTTATTACAATGATTTTCTTTCATCTG ATTGTTATTCTGTACTAAGGCATCGTGGTAAGCTGAACTATCCTACTTTCTCCATTTTCAAGCA AGTATGCCACCGTGATTTGAAGTTGGAGAATACACTGCTGGATGGAAGCCCTGCTCCACGCTTG AAAATATGTGACTTTGGCTATTCTAAGGTACTTAGCTAATGTTTCTATAATACATTACGGAAGT CTGTTTTCGGAACAATTCACTAAGCACCATAGGTAAATCCATAATGCTGTTTTCAGAACAATTC ACTAATCACCATAGGCAAAGTCAGACCAGATTTTGATATGTGTAAATTTCATTTGCTTACAATA CACTATACTGGCATTACTTTAGGACATTATCTGGTTTACTCTAATAAGCAAATGATAAAAGACA ATCTTTTTCTGCAGTCTTCAGTTCTCCATTCACAACCAAAATCCACTGTAGGAACCCCTGCTTA TATTGCACCTGAAGTTCTGTTGAAGAAAGAATACGATGGCAAGGTACATGACTTATTAAGCTTG TTGATTTAATCCCCGAGAGCAGTACCTTTGGGAGGACTATAGCTTTTCGTCTTGCATCGTATTT TGACAAACATAAACAATCAATATTTTGGGAGTTGTTTGGTCCCCTGTCCTGCATTCTGTATTTT CAGTGAAGTACCACCAAAATGCTCTACAAGTTCACACTAAGCTGAGAAAAAATTAGCCATTTTG TCAAGATTATGTGCCAATCACTTGGCCAAGTTTATCATGTGGTGAGGTCTACAGTGGTGAAATG GGTTTCCCCTTTTTCTTGTCATTCAAGTATACCTGATTTTTTCCATTGTGGTTGATACACTGGT CCTTTCCTGGGATGACCACTGAATATGTTTGTTGGTATGCTCTGTTTTAACGTCTGAAAGTGGA GATGCTGTGCATACCAGTGTTTCTAAAATTGGTAAAACACTGGTTACCGTTCTACTCCCTTCGT CACAAAACCTGGCTGGGAACCATCCAGAAACTATCTTGTCTTGACTGATTTCTGTTTTAATATA GTGCCACTGGTGAGATGAATTGAGTGTTCCGTAGAACTCAGGGTAACGTAGGACCTATGTCCCT TCTTTTTCTTTAAAACAGAAGTATTTCCATTACTGATAACCGCTTAGTGTAGGAATCCTGGCTC ATACTGATACATTATTTATACTGAAACAGACTGCTGATGTATGGTCCTGTGGTGTGACTCTATA TGTTATGGTAGTTGGTGCATATCCTTTCGAGGATCCAGAAGAGCCTAAGAACTTCCGTAAAACA ATTCAGGTTATATAATTTCTTTTCTTATTTCTCTTGCTTTGTTTACATTGGAGCACTTTTTTCA TCCTTGGCTCTCTGTGAAAAGCTGATGTCAGTGTCATTTTTGTGCAGCGTATCTTGAATGTTCA GTACTCAATTCCAGAAAACGTGGACATATCTCCAGAATGTAGGCATCTAATTTCGAGGATTTTT GTCGGGGATCCGTCTTTG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.261780543

Conservation Information
Conserved circRNAs	NA
PMCS	0.261780543

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							31654981-31656719(+)
31654837-31656689(-)
						
						Potential amino acid sequence
						
							MEYASGGELFERICKNVRFSEDEARYFFQQLISGVSYCHSMQVCHRDLKLENTLLDGSPAPRLK
ICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKTADVWSCGVTLYVMVVGAYPFEDPE
EPKNFRKTIQRILNVQYSIPENVDISPECRHLISRIFVGDPSLIDDNVQREIINHRSLKHPNII
RFKEVILTPTHLAIVMEYASGGELFERICKNVRFSEDEARYFFQQLISGVSYCHSMQVCHRDLK
LENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKTADVWSCGVT
LYVMVVGAYPFEDPEEPKNFRKTIQRILNVQYSIPENVDISPECRHLISRIFVGDPSLIDDNVQ
REIINHRSLKHPNIIRFKEVILTPTHLAIVMEYASGGELFERICKNVRFSEDEARYFFQQLISG
VSYCHSMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKK
EYDGKTADVWSCGVTLYVMVVGAYPFEDPEEPKNFRKTIQRILNVQYSIPENVDISPECRHLIS
RIFVGDPSLIDDNVQREIINHRSLKHPNIIRFKEVILTPTHLAIVMEYASGGELFERICKNVRF
SEDEARYFFQQLISGVSYCHSMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKST
VGTPAYIAPEVLLKKEYDGKTADVWSCGVTLYVMVVGAYPFEDPEEPKNFRKTIQRILNVQYSI
PENVDISPECRHLISRIFVGDPSL(+)
MFQRSVIYNLTLDIIIYQRRIPDKNPRN*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	31654981-31656719(+) 31654837-31656689(-)
Potential amino acid sequence	MEYASGGELFERICKNVRFSEDEARYFFQQLISGVSYCHSMQVCHRDLKLENTLLDGSPAPRLK ICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKTADVWSCGVTLYVMVVGAYPFEDPE EPKNFRKTIQRILNVQYSIPENVDISPECRHLISRIFVGDPSLIDDNVQREIINHRSLKHPNII RFKEVILTPTHLAIVMEYASGGELFERICKNVRFSEDEARYFFQQLISGVSYCHSMQVCHRDLK LENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKTADVWSCGVT LYVMVVGAYPFEDPEEPKNFRKTIQRILNVQYSIPENVDISPECRHLISRIFVGDPSLIDDNVQ REIINHRSLKHPNIIRFKEVILTPTHLAIVMEYASGGELFERICKNVRFSEDEARYFFQQLISG VSYCHSMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKK EYDGKTADVWSCGVTLYVMVVGAYPFEDPEEPKNFRKTIQRILNVQYSIPENVDISPECRHLIS RIFVGDPSLIDDNVQREIINHRSLKHPNIIRFKEVILTPTHLAIVMEYASGGELFERICKNVRF SEDEARYFFQQLISGVSYCHSMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKST VGTPAYIAPEVLLKKEYDGKTADVWSCGVTLYVMVVGAYPFEDPEEPKNFRKTIQRILNVQYSI PENVDISPECRHLISRIFVGDPSL(+) MFQRSVIYNLTLDIIIYQRRIPDKNPRN*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015

circRNA

Detail information of Os03g0764800_circ_g.1

Address

Any questions?

Supported by