Detail information of Solyc04g009280.1_circ_ag.1


General Information
CircRNA Name Solyc04g009280.1_circ_ag.1
ID in PlantcircBase sly_circ_003747
Alias sly_circ_1497
Organism Solanum lycopersicum
Position chr4: 2734833-2739438  JBrowse»
Reference genome SL2.50.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root
Exon boundary   NA-NA
Splicing signals   CT-AA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGTTCGATAGAGGCTGCACGATCAAGTACCAATGGTTCACGCAATGTGATCTGAATGCCATCAT
ATGTCCACAAGGCTAAATCTGCTTCGCCTTTCAAACcctagggagaaccatcctaagccagcaa
ctgcaacatccatgctcttgacatcccagctcgttccacgtgcttttacttccctcttttattc
cattgtct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTAGGGAGAACCATCCTAAGCCAGCAACTGCAACATCCATGCTCTTGACATCCCAGCTCGTTC
CACGTGCTTTTACTTCCCTCTTTTATTCCATTGTCTCAACTCAGAAACTCGCTCCATGGAAATG
GGAGGCTGAAGATCAACAAATGAAAACAGAACAATTAGCATGGTTCTGTGTTCTTTCCGATTGT
TTTCCTTTAAACTTGAGTAAATTGAAACCATCTAAGAGCCATCGATAAACCAGAACAATTAGGA
TTTGTTTACACATACAACACTATGACATCTGCTATCAGGCTAACATGGAACATGGATTTGTTTT
TGCAACTACGGCTTCTCATTAGCAAATAATACACATTGATCTTCAACCAAAAACATACTGATAC
AGTTCGAATGGAATTGGCTATAAAGTAGGAAATAATATTGAATCAGAAATACTGCAAAGAATTG
GAGTATTACCTGCAATCACACTCCAGTATGGTTGTTCTTGAGCTCATCGGCATTTCCTCTCTTC
CCTAGATGAAGAGGCGACACACTTGGTGATGCCCAGACGGTGACATAGATTGTTTCTACTGAGG
CAAAAACTAGATCGAGTCTAACTATGCCCCCAATATGTACAGTCTGCCCACGTGCAAGAAAATT
GTGAAAATACATTTTAGAGTCGAAAAGTACTTTTTGATCTCAGGCAAGAAATTGAGTTGCAGTC
ATGTATATCTTTTAACTGCAATATAAAACTAAAAAAAAAAAAAAAACAGATACAGATGAGGGAC
GAATAAAAGGAGTTATCTGAATCCCAAACCATTTGATAAGAGGTCAGTTTACAATGATTTAAGG
TCATTTTGTCAAATTTCTCTCCATTTCGAAGTTCACAGCACCTCGCACTGGCTTCATCAATATG
CATCACAGGATTCTTCAAAGTAAAGTGAAGTAAGCCTTCAGTTAAGAGGAAACTAAAAAATACA
AACAACTATCTTCAAACCAATTACGCTCACTCAAAAAGCTTAAAACAATAAGAAATCAAACACT
AAGACCTTTAAGTGCTTGGCAGAAACGCCCCCCATCAATACCTTTAAGATTATGAAGAGGCCAA
AATAAGACATCATATACACTTGAAAAGCTTCACAACGTATAGTTCCTCTTCAACAGCTCCACGT
TTTTCATTCTCTCAGGAATCTCCTTTAAATTTGGACAGTCATGGATACGAAGACCTTTAATCAG
AGGCATGGCACTTGTACCTAAATGCCATGTTTCTAGGTTCTCGAGATCATAAAGAATAAGGAAC
TCTAGTTGACTGAAGCTGTTATCACTGCACATTATTTCTTTTCCTTCATAAGCTCTAAACAAAT
CGAGATTCCTTAGGTTGGGCAACATTCCCAAAATAGGCATCGGATCTTCTTTCAGTACGGAGAA
CCTCAGAACCATCATTGTGATGGAACTTAGAAACAGATTAGGCAGTTTCTCTATTCTCCCTTCT
AACCACAATTTCTGGAGCTTTTGACAAGAATTAACAAATTCAAGAGATGGGAATGATTCATCAT
AATTTTTACACACCAATGTGAGAGTGCTAAGGTTTTTCAAGCTGCTAATGTTGTTTAGGGAGTA
AGATCTCTTAATATAAGCCATGCCTAATTCTCTAACATTGACTAAATCAACAGGGTCAACGTAT
TTCCATTGATCACAACCAACACCTTTAAGAACTTGAAGACTAGTAAGTTTGCTTATATGCACCA
GAGGTTCTGAATACTGAGCAACTAAATGTCTTAAATTTATTAGGTCAGCTGTCTTGCGGGGTAG
TTGGAAAGTGTAATCCGCTTCATTGACAACAAGTGTCTGTAGATTCTTGAGGTTGCCAATGGAA
GACGGAAGCTCATCGATACCTCTCAAGCTTAAGAACTTGAGGTGGTACAAACTCCCAATGGATC
CAGGTACAACACCACCATATTTAATATTCAAGTACAACACATATAGATGTCGAAACATATCTAT
ATGTTGGAACACATTACGAAAATGTGGATCGAAGACCATAATTGACCTCAACTTTAAGTTAGAA
AGATCAAGTGAGGGGTACCTTTGTCCTTGACTATGAATGACATGTCGGATACATACAGAGGATA
TGGAGTGGCTTGTTGGATCATAAACGTCAAAGAAGTTTACCTCCAATGCCTTTTGTATCGCAAG
ATCATGGAGTAAATCATGAACCCTACATTCAGTAACTTTTTCCCAAAATGTATTAGCCACTTGA
ACCAAGCTTCGTCTTATCAGCTCATTCAAGAAGCTTTCAGCGACATCCTCCATTCTTTCTCCTC
TGGGTATGAAACCCTCTGCCATCCACAACCGTATTATGTTATCAGCCTCGACCACTTGATCTTC
TGGAAAAATACCAAAGTAGAGAAAACACTGCTTGAGCGCAGTTGACAAATCATTGTAGCTTAAT
GATAGTATGTTAGAGATTTCAATAGATTTATCTTCTTTAATGTTCTTCCAAAGGTGATCTTTCA
CCTTTTGCCATTCGTTTAGCCCCTTTTTATGCGAAAGTAGTCCGCTCAATACAACAACTGCAAG
AGGTAAGCCTCTACACTTTTCCACCATATCCTTAGCTAGACTTTCCATTTCTGGAACCATTGCT
CGAATATCAAGTAGTTTCCTAAGAAAGAGATCCCAACTTTCTTGTTGACTTAGGAAACGAAGTT
TATGAACAAAACCTCTGTCATCTGCTCTTTCGGCGACATCCTCTTTGCGCGTGGTAATAATAAC
TCTGCTGCCATTCTTGCCATCCGGGAATGCTCTTTTCAAACTCTCCCATGCTTCTCTCTGCCAT
ACATCATCAACCACCACAAGGTATTTGCATTCTTTCAATAGATCACGAAGGTGAAATTCTAGAT
CTCCTTCTGTCATAGTTCCTAACAATTCTAGAGTTCCCTTGGTGCGACCTTGGATGGATTTTAT
GATAGTCTTAAGAAGATCCGTTGTGTTGTACTCTTGAGAAACACATATCCAAGCGCGTTTAGGG
AAGCTAGAGACTATATTAGGACTTGTGTATAGGTTTCTTGCAAGAGTGGTCTTGCCTAATCCAC
CCATGCCATAAATGGACACAACACTTCGACGAGGCTCTGGTCTGAGAAGTTGAGCTAGCAATGT
TTGTACAACATCCTGAAAGCCAACAAAAATGTAATCCTGGTCATCCACATATGAAGTAGTTCTC
CTCAATGTTCTAACCATGGCAGACTGGTTATTTGGTCCTTCTCCCGCATTACTATTGATATTTG
TAATACCATATGTCTCTCGTTTGCGAGCGATGTCCATGATTTGTTTCTTGAGTGATTGAATCTC
CTTGGTGACATTGTATAATTTCTTCTCCTTCCTACAGATGCAAGCACAAGCCTTGAGACGATTA
ACACGTTTACCAGCCTCGAAGCTATAAGTCTCGAGTATAGCAACAGCCTCATTAGCAATAGAGT
TGATCTCAAACACCCATTGTTGAATTCTTTGATCTCCACTTTGCTTTAGTTCTGCATCTTTGAG
GAAAGACTGCATGAACAGAAGCTCGTTTCGCAGCCACTGTATATCCTCTCTCAGACTTGTAAGT
AGGTTAATTTCCTGAATGAGGAAATCACCCAATTTTTTAACTGCAAATGACACAAACGCATCAG
CCATATTTAGTTTTGATTGAAAATAAGAGGGGGCTAGCTGTATATTGGAATGAATATTCGAAAA
TGGGAGATGGAGATCATATACAGTCAAAAGCAATTGACATAAAAGTTTAGAACAAATAATGTGT
TGAAAGGGTCCGCTTATGACTTATGTGATTAAAGTTTAGAAAAAAAAAATTACGATTAGTGCAA
ATGAAAGTTCCCATTATCAAAAAGGGAAAAAAATATATTTTTAAATTTCCCACTAAAGCGAAAG
GTACCTTTTTTTTTGGAATATCACACTGCTCCTTGATAAAATATGATTGTTGTGGTAATGGTTG
TTAGTTGTATTAAATATATAGTAACTCTGTTTTATCATTTAATCTAACTTTTTTGTATTAGTTT
TATTCCACGCCTGTAGTTTTGTCTTTCGAATAATTAATGACAATATATAAACGACAGAAAACAA
TACAATGTATGTATTTATCAAAGGAGGAATAGGAAAAATATGGATTTAGAAAAGACTAAAATCC
CCAGAGAGAAATGAAAACAAGGAATTTTAACAGGTTCCTATTTTCCACTATAATGGCATGTGTT
CTCTCCTCCCTCTTGTTTTTATCTGTTCTCCTTCATATGGGATTCTTTTTTCTGTTTGTCTAAT
CCCTTTTCAACCCACTCATATTCAATCCAATCCGCCCATTTTAAGTAGTCGTCGTACAAGGTTC
ACAAGAAAATTGACTCAGCTGCCTCTTTTTGTTGGATACTTATGAAAGTTGCATGGTCTCCTCT
GATGGATTCTTTTCCCTTGCTTCTTGACCTTCAAGCTTCGATGAGTTAGCGATGGCTTCTGATA
TAGCCTTTGGTAGCCAAAATCCAGGTCGTTCGATAGAGGCTGCACGATCAAGTACCAATGGTTC
ACGCAATGTGATCTGAATGCCATCATATGTCCACAAGGCTAAATCTGCTTCGCCTTTCAAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.135683113
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description salt-responsive
Other Information
References Wang et al., 2021