Plant Circular RNA Database

Detail information of Os02g0276200_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os02g0276200_circ_g.1
					
						ID in PlantcircBase
						osa_circ_040921
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 10135385-10139346  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRI-long
					
						Parent gene
						
							Os02g0276200						
					
						Parent gene annotation
						
							Similar to Isochorismatase family protein rutB. (Os02t0276200-01
)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os02g0276200_circ_g.2 Os02g0276200_circ_ag.1 Os02g0276200_circ_g.2 Os02g0276200_circ_ag.3 Os02g0276200_circ_ag.4 Os02g0276200_circ_g.5 Os02g0276400_circ_g.1 						
					
						Support reads
						NA
					
						Tissues
						root
					
						Exon boundary  
						
							No-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AT							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0276200-01:2

General Information
CircRNA Name	Os02g0276200_circ_g.1
ID in PlantcircBase	osa_circ_040921
Alias	NA
Organism	Oryza sativa
Position	chr2: 10135385-10139346 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	CIRI-long
Parent gene	Os02g0276200
Parent gene annotation	Similar to Isochorismatase family protein rutB. (Os02t0276200-01 )
Parent gene strand	-
Alternative splicing	Os02g0276200_circ_g.2 Os02g0276200_circ_ag.1 Os02g0276200_circ_g.2 Os02g0276200_circ_ag.3 Os02g0276200_circ_ag.4 Os02g0276200_circ_g.5 Os02g0276400_circ_g.1
Support reads	NA
Tissues	root
Exon boundary	No-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AT The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0276200-01:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AATCTATAAATTTGGCTAAATTTTTGGACGTGACAGATACATAGAAGGTGAAGTGTGAAAAGTG
TACTTACATAAATGGATCTCCGGCTTAGCAGCAGCTtataatgacgcatatggaggtaatttaa
acaagtaacaatatggaggtccagtcgctgttgctgatgatgcatccaggaaggtggtggtctt
gcgtatat

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 241
Transcript exons: 10135385-10135596,10139318-10139346
TATAATGACGCATATGGAGGTAATTTAAACAAGTAACAATATGGAGGTCCAGTCGCTGTTGCTG
ATGATGCATCCAGGAAGGTGGTGGTCTTGCGTATATATGTAGCAAGTTTCCTGTAATAACATGA
GCAGTACGTAACAGCAAGTTCAACGTCTCCATTCCTCCAAGGTTGGTGTTTCCACTCCGATATT
CTTCATATCTATCATGTTTGATAAATGGATCTCCGGCTTAGCAGCAGCT
						
					

						Genomic sequence
						
							TATAATGACGCATATGGAGGTAATTTAAACAAGTAACAATATGGAGGTCCAGTCGCTGTTGCTG
ATGATGCATCCAGGAAGGTGGTGGTCTTGCGTATATATGTAGCAAGTTTCCTGTAATAACATGA
GCAGTACGTAACAGCAAGTTCAACGTCTCCATTCCTCCAAGGTTGGTGTTTCCACTCCGATATT
CTTCATATCTATCATGTTTGCTGTTTAACATAAAGTAGTGCTCAATTACTAAGTAATTAATCAG
AGAGTACATAATCAACACATGTACACAAGGTCCAGTTTCAGTTATATTTACACTTAAAATAAAT
CCTATCCGTTAAGGCCTTGTTTGGATGGGCCTCAATGATGGCCCATTATGAAAAGAAAAAAGAA
GTCCATTTACTCCCCCAAACTAATCCATTGGATCACTTAACCCCTTAAACTTTTTTTTTTCACA
TTTTGCACTTTAAACTATTGAAAAAGGTTCACTTTACTCTAATATTTCTCTCTTTTATGTTACA
TTTTATACAAGTTGTATTCTAAGCTGAAAATTTTGGAGCCATAGATGAATTCATATCTAAATTC
AAAAATATTTTTAATTTTTTTCATAAATATTTGCTTGAACTTTATAATATTGATGTTTCGATTG
GTTTTAGATGTGTTCCAGCCTACGTAAACAGTGAGAAAAAATCTACAAAAAAATGTTGAGATGT
AAATTGTAATGCATATATCATCATATCAAACTTTCAGTGAAAATATGAGTTATATAAAGAGAAT
GAAAAGGAGAAATAGTGTTGGGCGTAAACTGAACCATTTTCAATAATTCGGAGGTGTAAAATAA
GCAAAATAGTTTAGCATTCCGGTGAAATAGTTCGGGGGAGTAAATGAACTTTTTCCTTTTTAAA
AAACAATTTATGTATACTTGCAATTTAGAAGCCATGCATGCCAAAATATGACACACACATATGT
ACACACATGTCATGAAGTCAATTAACAAGTTCTTGCAAATGTGTGTTGAATTCCTTCCTTTTGA
AATATGTCTTTATTTGTGTTAAATAGGGTTTACCATGTTTTGTGGGACTTCAATTTCTCCTCAT
GTAACACCTTGAAATGAGGTTAACAATTTCCAATTGTAGGCAACTCATTTGTCACCAAAAACTT
TGAGTGGGCACAACTATCTAGCTTGCATGGTTTGCGCCCAAAGGATGTTGCGCTGAGACTCTAC
ACTATCTCCAGAAAAAATGGAACATTGAAGAAGGCCATTGAACAGGACATGTGATACAAGATGT
CAACCCCCTACAGAACACAATGCAAGAAGTACATTTCCTTAACGACGAACAGGATGGAATCACT
TGAAAGCTCATAAGACATGGAGAACACATGGCAGTATCCACTTACAAAGTGTAGTTCTTTGGCT
CCATCAACACGAATTACAAGATGATTATCTCGATGCCCTAAGCGCCGAAGAAATGCAAGATCTT
TCCTTGGCAATAGGTGGTCTTTACCGACAGATGAGCTATTGTAGCTTTCAGGTCATGGTGTAGC
GAATGTGGATGTCTGATAGACTAGCAACCTATGGCTGACCAAACAGTACCTACTACTCACTCTA
TCGGCACACCCAAAGACACCCTCCAACTTCCTAGCAAAATGTAGATATACAGAGGGAATATGGG
ACATGCTATCAACATGGATCTTGCTCGAGCAAATCAAACCGACAATATGGAGCATAGCTTCAAT
AGTTCATGAGTGGTGGACGATGCTGACTGCAAGCAAGGGGCGACCGAAAAAAGGAGTTTGCACC
ATCATGCTACTAATGGCTTGAAATATTGAAAGGAGAAACCAAAAAATGTCCCAACACAGAGAAC
TTTCTGCGATAGCCCTAGTGGCGAAAGTTGAGGAGGCCAAAACTTAGACTCTACCAGAAGCAAA
ACGACTTTTAGAGCTTATCCCTTAGCTTTACTTTTTTTTTCTTTGAACTATTCTCACAATACCT
TTTACTCTTACATTCAATGAAATTGGCATACTCTAATTGCCGTGTGACATCCTGGCCTAATTAG
GATTTGGCCTATGTGGCACATGAGAGCTGTGTGCGCATGTTTAGTACCACCTTACTACTTTAGC
AATGTTGTAACAAACTTATAAGACTTTGTTCCTCTAACCATATCACTTCTGGGTTAACTATTTT
ACATGAAGCGAGTACGAAAGTGTAAATGAGATGGTCTATGTAAGTAGGCCAGCCTGTCGGTTGG
GCTGGGCTGCGTTTTCTGGAGGACAGACTGTTATAAATGATATCTGAGCCGACCCTCGCGGTTG
CGCGTATGGGTCAGTTTGTGGGCATATGGCACATGTGGGCTTTGTGTGAGGCATATGGTGCTAG
CACTGGACGTGCGGGCGTGGGTAGCATTTGTCTAAGGCTAGCCAATAAAACAAATTTATTTTCT
TGTGAAAAATCTCGTCTGTGTTGGGTCGCAAAAGAAAGGAGTTATCGATGAGATACACATTTTT
CCCGTGTGTAATTTCCAAGCTTCCACAAATGGTCATCCGTAACGGGCGCTAAAACACCCCATCA
AAGGTGACAACCGTCACTTTTGTTGGGTGAAAGTTGAAGCCCGTCATTGATGACACATTCGTGA
TGGGCTTTTAGAAGTGTGGCGTTTTAGGAAAACCTTATCGGTGATGGGTGGAAGTTGGGCCCGA
TAAAGAAATCTATCATCAGTAATGGCTACTCGCCCGTCATAGAGAGGTTTTTCACATTATTGAT
CACTTAACAGTGACCACACACACTTTGCCGCAATGATGAGGGTTCCAATCCATTATGGATGATT
CGTTCTATTGTCGTGAGATGTTTTGGTTTTGAAAGTTATTGTCATGCCCCAATTTCCGTTTGGG
ATTAAAAATTGGGTGCATGGTTTTGCTGGTCACACCCATGGCAAATAAGGACCGGTTCACGGAA
ACATTGGAATACTTACCGCGCTTACCACAAGCAAGAATGGGTAACTGCTGGACTTGTATAACTT
TCCCCTTTCCGACATTCCCAGGCAAGGATGGGTGTGGTGGAGTTTGGATGGGCCCTGCGATGGC
CTATGTGGCTTCCGGATTCACCTAGTCACGAGGGGGTTGCCCACCTTTGTTTTAAAGGTGGGGG
CAAAACCTGCGGTGTGGTGCGCATGGTCAGGGGGAGTTATGCGAAGCGTTTTGTCACAATCACT
CGACATGTTTACGTGTTTGGCCGGACACGGTGACATGCCGATGGATTGTGTATTGTGTGTACAG
TTGTGCACCTCTGGCTAGCGTAAAACTATTCGAATAGCCGTGTTTGTGGTTATGGTCGATCAAC
CAGATTCACCGTGATTAGTCCCACATTATTAATAACTTGACATAATGAACTGGTGTAGTTTAGG
TGGTTTGGTTGGGCCTGTTCAACATGGTGTAGTGTTGTTCCGTGGACATTTAATCTTGCCTTAA
TTAATCAACTATTTTACTGTTTTAGACTAGTTATAAAATGTTTACAACCGCCTCTATGTAAATT
GCCGCAAACCCCTCTTTGTCTCCCTATGCACGCCTGCATCATTGGTGCGTGCTTGCTAAGTACG
ATGGTTGTACTCAGTCTCGCTATTATTTCAACTTTTGTAGAAGCGTAGTGCTCCTGAGTTGAAG
ACGGAGTTAGAGGATAAAGGCTTATACCCTAGTTGAGTTTTACCTATGGAGTGGAGCTGAAGCC
TCGCTAGGATCGCATTTTTTTCGTTGCTGCTACTTTCTTTTCGGTGTAAGGATCACTAAGTGTC
TTTTGTAAGTATTTATATTTTATTTACGTTTGGATCTTTATATTAATTTGTCATTTTATGTACC
CTGATTTGATTAGAAACAAAATAATCTATAAATTTGGCTAAATTTTTGGACGTGACAGATACAT
AGAAGGTGAAGTGTGAAAAGTGTACTTACATAAATGGATCTCCGGCTTAGCAGCAGCT
						
					

			
		

Sequences
Splice junction sequence	AATCTATAAATTTGGCTAAATTTTTGGACGTGACAGATACATAGAAGGTGAAGTGTGAAAAGTG TACTTACATAAATGGATCTCCGGCTTAGCAGCAGCTtataatgacgcatatggaggtaatttaa acaagtaacaatatggaggtccagtcgctgttgctgatgatgcatccaggaaggtggtggtctt gcgtatat
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 241 Transcript exons: 10135385-10135596,10139318-10139346 TATAATGACGCATATGGAGGTAATTTAAACAAGTAACAATATGGAGGTCCAGTCGCTGTTGCTG ATGATGCATCCAGGAAGGTGGTGGTCTTGCGTATATATGTAGCAAGTTTCCTGTAATAACATGA GCAGTACGTAACAGCAAGTTCAACGTCTCCATTCCTCCAAGGTTGGTGTTTCCACTCCGATATT CTTCATATCTATCATGTTTGATAAATGGATCTCCGGCTTAGCAGCAGCT
Genomic sequence	TATAATGACGCATATGGAGGTAATTTAAACAAGTAACAATATGGAGGTCCAGTCGCTGTTGCTG ATGATGCATCCAGGAAGGTGGTGGTCTTGCGTATATATGTAGCAAGTTTCCTGTAATAACATGA GCAGTACGTAACAGCAAGTTCAACGTCTCCATTCCTCCAAGGTTGGTGTTTCCACTCCGATATT CTTCATATCTATCATGTTTGCTGTTTAACATAAAGTAGTGCTCAATTACTAAGTAATTAATCAG AGAGTACATAATCAACACATGTACACAAGGTCCAGTTTCAGTTATATTTACACTTAAAATAAAT CCTATCCGTTAAGGCCTTGTTTGGATGGGCCTCAATGATGGCCCATTATGAAAAGAAAAAAGAA GTCCATTTACTCCCCCAAACTAATCCATTGGATCACTTAACCCCTTAAACTTTTTTTTTTCACA TTTTGCACTTTAAACTATTGAAAAAGGTTCACTTTACTCTAATATTTCTCTCTTTTATGTTACA TTTTATACAAGTTGTATTCTAAGCTGAAAATTTTGGAGCCATAGATGAATTCATATCTAAATTC AAAAATATTTTTAATTTTTTTCATAAATATTTGCTTGAACTTTATAATATTGATGTTTCGATTG GTTTTAGATGTGTTCCAGCCTACGTAAACAGTGAGAAAAAATCTACAAAAAAATGTTGAGATGT AAATTGTAATGCATATATCATCATATCAAACTTTCAGTGAAAATATGAGTTATATAAAGAGAAT GAAAAGGAGAAATAGTGTTGGGCGTAAACTGAACCATTTTCAATAATTCGGAGGTGTAAAATAA GCAAAATAGTTTAGCATTCCGGTGAAATAGTTCGGGGGAGTAAATGAACTTTTTCCTTTTTAAA AAACAATTTATGTATACTTGCAATTTAGAAGCCATGCATGCCAAAATATGACACACACATATGT ACACACATGTCATGAAGTCAATTAACAAGTTCTTGCAAATGTGTGTTGAATTCCTTCCTTTTGA AATATGTCTTTATTTGTGTTAAATAGGGTTTACCATGTTTTGTGGGACTTCAATTTCTCCTCAT GTAACACCTTGAAATGAGGTTAACAATTTCCAATTGTAGGCAACTCATTTGTCACCAAAAACTT TGAGTGGGCACAACTATCTAGCTTGCATGGTTTGCGCCCAAAGGATGTTGCGCTGAGACTCTAC ACTATCTCCAGAAAAAATGGAACATTGAAGAAGGCCATTGAACAGGACATGTGATACAAGATGT CAACCCCCTACAGAACACAATGCAAGAAGTACATTTCCTTAACGACGAACAGGATGGAATCACT TGAAAGCTCATAAGACATGGAGAACACATGGCAGTATCCACTTACAAAGTGTAGTTCTTTGGCT CCATCAACACGAATTACAAGATGATTATCTCGATGCCCTAAGCGCCGAAGAAATGCAAGATCTT TCCTTGGCAATAGGTGGTCTTTACCGACAGATGAGCTATTGTAGCTTTCAGGTCATGGTGTAGC GAATGTGGATGTCTGATAGACTAGCAACCTATGGCTGACCAAACAGTACCTACTACTCACTCTA TCGGCACACCCAAAGACACCCTCCAACTTCCTAGCAAAATGTAGATATACAGAGGGAATATGGG ACATGCTATCAACATGGATCTTGCTCGAGCAAATCAAACCGACAATATGGAGCATAGCTTCAAT AGTTCATGAGTGGTGGACGATGCTGACTGCAAGCAAGGGGCGACCGAAAAAAGGAGTTTGCACC ATCATGCTACTAATGGCTTGAAATATTGAAAGGAGAAACCAAAAAATGTCCCAACACAGAGAAC TTTCTGCGATAGCCCTAGTGGCGAAAGTTGAGGAGGCCAAAACTTAGACTCTACCAGAAGCAAA ACGACTTTTAGAGCTTATCCCTTAGCTTTACTTTTTTTTTCTTTGAACTATTCTCACAATACCT TTTACTCTTACATTCAATGAAATTGGCATACTCTAATTGCCGTGTGACATCCTGGCCTAATTAG GATTTGGCCTATGTGGCACATGAGAGCTGTGTGCGCATGTTTAGTACCACCTTACTACTTTAGC AATGTTGTAACAAACTTATAAGACTTTGTTCCTCTAACCATATCACTTCTGGGTTAACTATTTT ACATGAAGCGAGTACGAAAGTGTAAATGAGATGGTCTATGTAAGTAGGCCAGCCTGTCGGTTGG GCTGGGCTGCGTTTTCTGGAGGACAGACTGTTATAAATGATATCTGAGCCGACCCTCGCGGTTG CGCGTATGGGTCAGTTTGTGGGCATATGGCACATGTGGGCTTTGTGTGAGGCATATGGTGCTAG CACTGGACGTGCGGGCGTGGGTAGCATTTGTCTAAGGCTAGCCAATAAAACAAATTTATTTTCT TGTGAAAAATCTCGTCTGTGTTGGGTCGCAAAAGAAAGGAGTTATCGATGAGATACACATTTTT CCCGTGTGTAATTTCCAAGCTTCCACAAATGGTCATCCGTAACGGGCGCTAAAACACCCCATCA AAGGTGACAACCGTCACTTTTGTTGGGTGAAAGTTGAAGCCCGTCATTGATGACACATTCGTGA TGGGCTTTTAGAAGTGTGGCGTTTTAGGAAAACCTTATCGGTGATGGGTGGAAGTTGGGCCCGA TAAAGAAATCTATCATCAGTAATGGCTACTCGCCCGTCATAGAGAGGTTTTTCACATTATTGAT CACTTAACAGTGACCACACACACTTTGCCGCAATGATGAGGGTTCCAATCCATTATGGATGATT CGTTCTATTGTCGTGAGATGTTTTGGTTTTGAAAGTTATTGTCATGCCCCAATTTCCGTTTGGG ATTAAAAATTGGGTGCATGGTTTTGCTGGTCACACCCATGGCAAATAAGGACCGGTTCACGGAA ACATTGGAATACTTACCGCGCTTACCACAAGCAAGAATGGGTAACTGCTGGACTTGTATAACTT TCCCCTTTCCGACATTCCCAGGCAAGGATGGGTGTGGTGGAGTTTGGATGGGCCCTGCGATGGC CTATGTGGCTTCCGGATTCACCTAGTCACGAGGGGGTTGCCCACCTTTGTTTTAAAGGTGGGGG CAAAACCTGCGGTGTGGTGCGCATGGTCAGGGGGAGTTATGCGAAGCGTTTTGTCACAATCACT CGACATGTTTACGTGTTTGGCCGGACACGGTGACATGCCGATGGATTGTGTATTGTGTGTACAG TTGTGCACCTCTGGCTAGCGTAAAACTATTCGAATAGCCGTGTTTGTGGTTATGGTCGATCAAC CAGATTCACCGTGATTAGTCCCACATTATTAATAACTTGACATAATGAACTGGTGTAGTTTAGG TGGTTTGGTTGGGCCTGTTCAACATGGTGTAGTGTTGTTCCGTGGACATTTAATCTTGCCTTAA TTAATCAACTATTTTACTGTTTTAGACTAGTTATAAAATGTTTACAACCGCCTCTATGTAAATT GCCGCAAACCCCTCTTTGTCTCCCTATGCACGCCTGCATCATTGGTGCGTGCTTGCTAAGTACG ATGGTTGTACTCAGTCTCGCTATTATTTCAACTTTTGTAGAAGCGTAGTGCTCCTGAGTTGAAG ACGGAGTTAGAGGATAAAGGCTTATACCCTAGTTGAGTTTTACCTATGGAGTGGAGCTGAAGCC TCGCTAGGATCGCATTTTTTTCGTTGCTGCTACTTTCTTTTCGGTGTAAGGATCACTAAGTGTC TTTTGTAAGTATTTATATTTTATTTACGTTTGGATCTTTATATTAATTTGTCATTTTATGTACC CTGATTTGATTAGAAACAAAATAATCTATAAATTTGGCTAAATTTTTGGACGTGACAGATACAT AGAAGGTGAAGTGTGAAAAGTGTACTTACATAAATGGATCTCCGGCTTAGCAGCAGCT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.093111964

Conservation Information
Conserved circRNAs	NA
PMCS	0.093111964

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							osa-miR2275a 						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	osa-miR2275a
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						this study

circRNA

Detail information of Os02g0276200_circ_g.1

Address

Any questions?

Supported by