Detail information of Os03g0744650_circ_igg.1


General Information
CircRNA Name Os03g0744650_circ_igg.1
ID in PlantcircBase osa_circ_021836
Alias Os_ciR3366
Organism Oryza sativa
Position chr3: 30566172-30567009  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os03g0744650_circ_ig.1
Support reads 3
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATTCTCGGATACATAGTCTGACTCCAAGGCTTCTCGATGCTTCCTGATGAACTCTCTGGAGCT
ACCTTTAGCCCAAGGCGGCAAAACAACATCACCAACcttcctgtcagtccgtctctgaggatgt
ggtttttggaataattgtttgggggtctgaccaaaatgattgatttgtgccagtatcgaagctt
tcatggta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCCTGTCAGTCCGTCTCTGAGGATGTGGTTTTTGGAATAATTGTTTGGGGGTCTGACCAAAA
TGATTGATTTGTGCCAGTATCGAAGCTTTCATGGTAGGATCTGATACGGAATCTATGTCAACAT
TGCCTTCATACGTGTAGTGATAGAAGACATTTACAGCATCTTCAGCTGCCTGCCATATACAAAA
GAAATAACAATTAGAACAAGTTAATAAATATGATTAGCAGAAAACTTCCCCTGTTTCGTGTCAC
AATTTTACAAGTCACTCTGGTTTACATTCACAAATGTAAAATACTTCTGGCTAACAGTGTAGAA
ATCAATGCTCAGAGTTGAAAGACCATGAGAAAGTAAAAAATGATACAAATTTAGCATGCTGAAC
AAGACCTAGAAAAAACTATTGAGAGGTTTTGAATGGGTAAGATGCTATAAAGGACAAAATTTAT
CAATCTATAAAAAAACACAATTCATTTTCCTTTGTAAAAAACTACAAACATGTCTGAATTGTCA
TGGACTCATGACGATGGCAACGTCACCACCACTAGGACCACAGAAATGAAGGAATACGAATCTA
TAACAGAAGATAACACCCTTGTTTTTAAGACAAACATATTTATGTTGTCATGATGACGGCAATA
TCACCACCATTAGGAACAATAAAGAATGCACAAACATGAGATGGCCTATACCTTTCCTCTCTGC
TTATATCCAAAAATAAGATCTATCCAGTGATGCAGATTCTCGGATACATAGTCTGACTCCAAGG
CTTCTCGATGCTTCCTGATGAACTCTCTGGAGCTACCTTTAGCCCAAGGCGGCAAAACAACATC
ACCAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.186672603
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015