Detail information of Os01g0918100_circ_g.3


General Information
CircRNA Name Os01g0918100_circ_g.3
ID in PlantcircBase osa_circ_005491
Alias NA
Organism Oryza sativa
Position chr1: 40056773-40057518  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os01g0918100
Parent gene annotation Conserved hypothetical protein. (Os01t0918100-01)
Parent gene strand -
Alternative splicing Os01g0918100_circ_g.4
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os01t0918100-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGGTATATACCTCAACATTGTCTGAACAGAACTGCAGCATGCGTCTTCGTTTAGCTTGTAAAG
TTTCCTTTCCTTCATCAAAATCCTTGACAATGATATctttcagaggtgttggtcgagcttgcac
agtgttcttctggactgtgttgccctgctcccgagacgaagaatttttgtgcactgtaaaacaa
agtagaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTCAGAGGTGTTGGTCGAGCTTGCACAGTGTTCTTCTGGACTGTGTTGCCCTGCTCCCGAGA
CGAAGAATTTTTGTGCACTGTAAAACAAAGTAGAGAACACACTCTAGTGTCATGCAACAAATAG
AAGTACTGAAATTCTGGGAACAGAAGTTTGTTTACACTAACCGGAAAGATTGGCTTCTTCCATG
GCCACAGCAGGACTACTCAAATGAACGGACATATCTTCAGGCGGGCATTGAGGCTCACTCTCTT
GTGGTGAACAATCTACTAGCCATTCTTCTGGTAGTTCCTCTGTCCCATCACAGTTTAATAAACA
CTGATCACCTGGAGTCATCTCTAGAATTAAGAGTGGAGATAAATCAACCCAATCTAGCATAACA
GACATGGTGGAGATATACCAGAGAAACCCAAATTCAATTGAAGATTTTCCGATAGTCCATCTGC
TGCCATAGCACAATCCATCTACACATAACAAGAGTACAAGACTATCACATTGATGGATTTAAAA
CACCAAGTTAGTGTATTTGATCATTGCTTTGACAAGCCTTGCAACCCAGAAGTATTAATCTGTA
TTTAAATTCATTTTTCATGGACTTTTTCTAAAACGATTAGTGGACTTAACTTCATATTAGAACA
TTAGACTTGGTATATACCTCAACATTGTCTGAACAGAACTGCAGCATGCGTCTTCGTTTAGCTT
GTAAAGTTTCCTTTCCTTCATCAAAATCCTTGACAATGATAT
Conservation Information
Conserved circRNAs NA
PMCS 0.119753307
Functional Information
Coding potential Y
Potential coding position 40057459-40056985(+)
40057461-40056775(-)
Potential amino acid sequence MRLRLACKVSFPSSKSLTMISFRGVGRACTVFFWTVLPCSRDEEFLCTERLASSMATAGLLK*(
+)
MLQFCSDNVEMDCAMAADGLSENLQLNLGFSGDQCLLNCDGTEELPEEWLVDCSPQESEPQCPP
EDMSVHLSSPAVAMEEANLSVHKNSSSREQGNTVQKNTVQARPTPLKDIIVKDFDEGKETLQAK
RRRMLQFCSDNVEMDCAMAADGLSENLQLNLGFSGDQCLLNCDGTEELPEEWLVDCSPQESEPQ
CPPEDMSVHLSSPAVAMEEANLSVHKNSSSREQGNTVQKNTVQARPTPLKDIIVKDFDEGKETL
QAKRRRMLQFCSDNVEMDCAMAADGLSENLQLNLGFSGDQCLLNCDGTEELPEEWLVDCSPQES
EPQCPPEDMSVHLSSPAVAMEEANLSVHKNSSSREQGNTVQKNTVQARPTPLKDIIVKDFDEGK
ETLQAKRRRMLQFCSDNVEMDCAMAADGLSENLQLNLGFSGDQCLLNCDGTEELPEEWLVDCSP
QESEPQCPPEDMSVHLSSPAVAMEEANLSVHKNSSSREQGNTVQKNTVQARPTPLK(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017