Detail information of AT1G42970_circ_g.10


General Information
CircRNA Name AT1G42970_circ_g.10
ID in PlantcircBase ath_circ_005901
Alias At_ciR5070, AT1G42970_C1
Organism Arabidpsis thaliana
Position chr1: 16128153-16128718  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ, CIRI2
Parent gene AT1G42970
Parent gene annotation Glyceraldehyde-3-phosphate dehydrogenase GAPB, chloroplastic
Parent gene strand +
Alternative splicing AT1G42970_circ_g.1 AT1G42970_circ_g.2 AT1G42970_circ_g.3 AT1G42970_circ_g.4 AT1G42970_circ_g.5 AT1G42970_circ_g.6 AT1G42970_circ_g.7 AT1G42970_circ_g.8 AT1G42970_circ_g.9 AT1G42970_circ_g.11 AT1G42970_circ_g.12 AT1G42970_circ_g.13 AT1G42970_circ_g.14 AT1G42970_circ_g.15 AT1G42970_circ_g.16 AT1G42970_circ_g.17 AT1G42970_circ_g.18 AT1G42970_circ_g.19
Support reads 2/1/4
Tissues leaf/aerial/seedlings
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT1G42970.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGAGTATTCATGCTTCAGTTTTGGTCTTTCTTTGCAGCAATGCATCTTGCACCACCAACTGTT
TGGCACCTTTTGCTAAAGTCTTGGATGAAGAATTTGgcatcccacttgcttaagtatgactcca
tgcttggaaccttcaaggctgaagtgaaaattgtggacaatgaaactattagtgttgatggtaa
gctcatca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 391
Transcript exons: 16128153-16128320,16128412-16128572,16128657-16128718
GCATCCCACTTGCTTAAGTATGACTCCATGCTTGGAACCTTCAAGGCTGAAGTGAAAATTGTGG
ACAATGAAACTATTAGTGTTGATGGTAAGCTCATCAAAGTTGTCTCCAACAGAGACCCTCTTAA
GCTTCCATGGGCTGAGCTCGGCATTGACATTGTTATCGAGGGAACAGGAGTGTTTGTTGATGGG
CCAGGAGCAGGGAAGCATATCCAAGCCGGAGCCTCGAAAGTTATCATCACTGCACCAGCCAAAG
GTGCTGATATCCCTACCTATGTTATGGGAGTCAATGAGCAAGACTATGGTCACGATGTCGCTAA
CATTATTAGCAATGCATCTTGCACCACCAACTGTTTGGCACCTTTTGCTAAAGTCTTGGATGAA
GAATTTG

Genomic sequence GCATCCCACTTGCTTAAGTATGACTCCATGCTTGGAACCTTCAAGGCTGAAGTGAAAATTGTGG
ACAATGAAACTATTAGTGTTGATGGTAAGCTCATCAAAGTTGTCTCCAACAGAGACCCTCTTAA
GCTTCCATGGGCTGAGCTCGGCATTGACATTGTTATCGAGGTGAAATTTCTACCGAAAACTGCT
TATTATGATGGCAAATCGCGCTACGGAACTTAGTTAATCGAAAACTGTATATGGTTATGATCAT
CAGGGAACAGGAGTGTTTGTTGATGGGCCAGGAGCAGGGAAGCATATCCAAGCCGGAGCCTCGA
AAGTTATCATCACTGCACCAGCCAAAGGTGCTGATATCCCTACCTATGTTATGGGAGTCAATGA
GCAAGACTATGGTCACGATGTCGCTAACATTATTAGGTCCGTTTAAAGTTAAACCTTTGATCTC
ATTAAAGCATGAACGAGTTTGAGTATTCATGCTTCAGTTTTGGTCTTTCTTTGCAGCAATGCAT
CTTGCACCACCAACTGTTTGGCACCTTTTGCTAAAGTCTTGGATGAAGAATTTG
Conservation Information
Conserved circRNAs NA
PMCS 0.417297398
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description response to drought stress; responsive to heat stress