Plant Circular RNA Database

Detail information of 2_circ_ag.8

			
						 General Information
					
						CircRNA Name
						2_circ_ag.8
					
						ID in PlantcircBase
						ath_circ_018719
					
						Alias
						2:19062694-19066631
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr2: 19062694-19066631  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							ag-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							2_circ_ag.6 2_circ_ag.7 2_circ_ag.9 AT2G46440_circ_g.1 2_circ_ag.2 AT2G46450_circ_g.1 AT2G46450_circ_g.2 						
					
						Support reads
						1/1/2/2
					
						Tissues
						seedling;root;leaf
					
						Exon boundary  
						
							NA-NA							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	2_circ_ag.8
ID in PlantcircBase	ath_circ_018719
Alias	2:19062694-19066631
Organism	Arabidpsis thaliana
Position	chr2: 19062694-19066631 JBrowse»
Reference genome	TAIR10.38
Type	ag-circRNA
Identification method	find_circ; CIRI2
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	2_circ_ag.6 2_circ_ag.7 2_circ_ag.9 AT2G46440_circ_g.1 2_circ_ag.2 AT2G46450_circ_g.1 AT2G46450_circ_g.2
Support reads	1/1/2/2
Tissues	seedling;root;leaf
Exon boundary	NA-NA "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TCCGCTTTATAAAGAAGTGACAAGAGCCTTTGGTACGGTAGCAGAATCAAAGTGGGCTGGAGCT
GCTTTAAACTTATTCCTTTACATGCTGCACAGTTATgtggtggttctcactctcataccactgt
ctgcgtcgctggtgtcagagagaatactgaaatggattatacttagtcaatatgtaccaagaat
cattcgta

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 3938
Transcript exons: 19062694-19066631
GTGGTGGTTCTCACTCTCATACCACTGTCTGCGTCGCTGGTGTCAGAGAGAATACTGAAATGGA
TTATACTTAGTCAATATGTACCAAGAATCATTCGTATGTATCCGCTTTATAAAGAAGTGACAAG
AGCCTTTGGTACGGTAGCAGAATCAAAGTGGGCTGGAGCTGCTTTAAACTTATTCCTTTACATG
CTGCACAGTTAT
						
					

						Genomic sequence
						
							GTGGTGGTTCTCACTCTCATACCACTGTCTGCGTCGCTGGTGTCAGAGAGAATACTGAAATGGA
TTATACTTAGTCAATATGTACCAAGAATCATTCGTATGTATCCGCTTTATAAAGAAGTGACAAG
AGCCTTTGGTACGGTAGCAGAATCAAAGCGGGTCGGAGCTGCTTTAAACTTCTTCCTTTACATG
CTGCACAGTTATGTAAGTCTTTGCTCTTGATCCCACTTCCCACCCACTGTTGGTGTTGTTGTTG
TTGCAACTGTGCATGATGGATGGCTACTATATGTATATAGGTGTGTGGGGCTTTTTGGTATTTG
AGTTCAATAGAAAGGAAAAGCACATGTTGGCGTGCCGCGTGTGCTAGGACATCCGACTGCAATC
TCACGGTCACGGATCTGCTTTGTAAACGAGCTGGTAGTGACAACATTCGTTTTCTCAACACCTC
ATGCCCATTAATCGACCCTGCCCAAATCACAAACTCCACAGACTTCGACTTTGGTATGTATATT
GATGCGTTGAAGTCAGGGGTCCTAGAGGTGAAACCAAAGGATTTTCCCAGGAAATTCGTCTATT
GCTTTTGGTGGGGTCTCCGTAATATTAGGTACTAAATTGTATTATGCTAAACTCTCTGCCGTGA
GACATATATCAATCCACTTGATAGATTAATCCGCTCTACAGTGCTTTGGGCCAAAACCTGGAGA
CAAGCAACTCTGCAGGGGAGATTTTCTTTGCTATCATCATATGTGTCTCTGGTTTACTCTTGTT
TGCTGTGCTCATTGGAAACGTTCAGGTAATGTTCATACCTTAGAACTAGAGTTTGATCTCATAA
AGCTGATTCTTAATAGATGTTTGTTTTTGGTGATCGCAGAAGTACTTGCAATCATCTACGACTA
GAGTAGATGAAATGGAAGAGAAAAAGAGAGACACAGAAAAATGGATGTCCTATCGGGAGATACC
AGAGTATTTGAAGGAACGCATTAGGAGATTTGAAGATTACAAATGGAGAAGAACCAAAGGCACC
GAAGAGGAAGCTCTTCTTCGTAGTCTTCCAAAAGACCTCAGACTCGAAACCAAACGCTATCTTT
TTCTCAAGTTGCTCAAAAAGGTAACCTTTTATTTTGTCCCATCATAACTTAACCAACTCCTCTT
GAATTCACTGTTTTGTTTTGTTTCAGGTGCCTTTGCTCCAAGCTATGGATGATCAGTTACTAGA
TGCTCTATGTGCTCGTCTCAAAACGGTTCATTATACAGAGAAGAGTTACATTGTGCGTGAAGGT
GAACCAGTGGAGGATATGTTGTTTATAATGAGAGGAAATTTAATCAGCACCACTACTTATGGTG
GCAGAACTGGTTTCTTCAATTCTGTTGACTTAATTGCTGGTGATTCCTGTGGAGATCTTCTCAC
TTGGGCATTATATTCTCTTAGTTCCCAGTTCCCTATCTCTAGTAGAACCGTTCAAGCGTTGACA
GAAGTCGAAGGCTTTGTTATCTCAGCTGATGATCTCAAGTTTGTCGCTACTCAGTATCGTCGCC
TCCATAGCAAGCAACTCCAACACATGTTCAGGTAATATTTTCAATTGAAAAAATGCATGTTGAG
TTAATCATATTGGATAATGATGACATATCGTATACCTATCTCGTTTCTCAAGTTACCTTCAACA
TAATAACCCAAAATCTTTTTATCACCTACCTTGTATCTTGTTTCTCAAGTTACCTTTAATATTA
TAATCTAAACAACTTTTTGTCTCCAGGTTTTATTCATTGCAATGGCAGACATGGGCAGCATGTT
TTATACAAGCAGCATGGAAGAGACATTGTAGAAGGAAGCTCTCAAAGGCTTTACGTGAAGAAGA
AGGCAAACTACATAACACTCTTCAGAACGATGATTCAGGAGGCAATAAACTTAACTTAGGTGCT
GCGATTTATGCGTAGAGGTTTGCTTCTCATGCTCTGAGGAATCTAAGAGCAAATGCAGCAGCCC
GAAATTCTAGATTCCCACACATGTTAATTTTGTTGCCTCAGAAACCAGCCGATCCTTAGTTTCC
TATGGATGAAACCTAGTTTTGTATAGTTGTTGACTCTATCTCTCTGTAATGTGATCGCTAGTGA
TTTCTTGCAAATAACTTTTGTGTAAACCAGTAAAGATATTTTTATGTGAAATAATAATCAATAG
GAAAATTTCTTATAGAGTTTAGTAAAAAAACAATTTTAATGGAGACGTTTTAGCGAATACTCAC
CACCTCAACCACTGTAAATGTTTTGTTATCCAAAAACTTCTAATTCCTAAGCTTTTAACTTTTA
AAGCATCTCTCGTTAAACAATTTGTATTTTTTTGCAAAACAAAAATAAAACGCTGTATTTTTAA
ATTAGAATCCTTAAGGTTGGGTATTTTTAAGTGAATCAAAAATTCCAACCAAAGTAATGGAACT
AAATAACTGTTTTTTATTAGAAAACTGAATACGTACATATACCAAAGTACATAATAAAACTAGT
TCTATTATTGATATATATAAATTAAACACAGATTTAGATTATATTTAAACACATAGCTAAGATT
GTTTACTAGAGAGACTTAATTAGGTCTCTCTATTGGTGGTCTAGCTTGGCTTCACTCTCGAATT
GAAGAGGAACAACGTGTTTGTTTAGTCTTTTTAGGACTTACAATTACGTCTCTGTTGTTTAGTA
ACGATGGCAAATAAAAATAATGATTTAGTATATTTGAACATGGTCCCAAATGGGCAAGTTGTAA
AAAGAAGACAAGTAGAGAAAATTCAAAATTGGATTTCGTGGATATTATTGTAAGTTGCAGGGAA
AAAAGAGTGAGACTGCCCCACCGTAGACTAAAATGATTTAGCTTACCACTCTCACTCTGCATCC
ACAGTTTAATAATTACCCCTTTAATATTTTAATCATTATTTTAGTAGACCAAAACTGTTTAGTG
TTGAAACTTGTGCATCCACATGAGTGTTGGTTAAAGGTTGAGAACATCGATTTGCCAACCATAT
CTCACAGCCACAGCCATTTTTATTCTCTCTCGGTCTCTCTTCTCAGTCTCTCACTACCACAGCC
TTAAGTTCGAGAAGACCGAAGTGGACTTCATTTTCTTGTACGGGAATTAAAATATTGCAGATTG
ACGACATATACTAACATGAATCATCGGAGGAGTAAATTTGCCAGGTACTTCTTCGAAGTTTTGA
TTAACTACTATTTCATATTTGGTTGTGATAGTGATCATTGTTGATACAGGATAGATAGTATGGG
AGTTGATGGAAAATTGAAAAGTGTTAGAGGACGCTTGAAGAAGGTTTACGGGAAGATGAAAACA
CTCGAAAACTGGAGGAAGACCGTCTTGTTAGCTTGCGTGGTTGCTTTGGCTATTGATCCTTTGT
TTCTGTTTATCCCTTTGATTGATTCTCAGAGATTTTGCTTCACTTTCGACAAGACACTTGTAGC
AGTAGTTTGTGTCATTCGTACTTTTATTGACACGTTCTATGTGATTCACATCATTTATTATCTT
ATAACCGAGACCATTGCTCCTCGTTCTCAAGCATCTTTGAGAGGCGAGATTGTCGTGCATTCTA
AGGCTACACTGAAAACACGTCTCCTCTTTCACTTCATTGTTGACATTATCTCTGTTCTCCCCAT
TCCTCAGGTATTGTTCCCTTCGTTTGTGTGTGCATGACATCTACTTTTCCATGCTTTTTATTAG
AGATGTACATGCGTAATTATAGGTGGTGGTTCTCACTCTCATACCACTGTCTGCGTCGCTGGTG
TCAGAGAGAATACTGAAATGGATTATACTTAGTCAATATGTACCAAGAATCATTCGTATGTATC
CGCTTTATAAAGAAGTGACAAGAGCCTTTGGTACGGTAGCAGAATCAAAGTGGGCTGGAGCTGC
TTTAAACTTATTCCTTTACATGCTGCACAGTTAT
						
					

			
		

Sequences
Splice junction sequence	TCCGCTTTATAAAGAAGTGACAAGAGCCTTTGGTACGGTAGCAGAATCAAAGTGGGCTGGAGCT GCTTTAAACTTATTCCTTTACATGCTGCACAGTTATgtggtggttctcactctcataccactgt ctgcgtcgctggtgtcagagagaatactgaaatggattatacttagtcaatatgtaccaagaat cattcgta
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 3938 Transcript exons: 19062694-19066631 GTGGTGGTTCTCACTCTCATACCACTGTCTGCGTCGCTGGTGTCAGAGAGAATACTGAAATGGA TTATACTTAGTCAATATGTACCAAGAATCATTCGTATGTATCCGCTTTATAAAGAAGTGACAAG AGCCTTTGGTACGGTAGCAGAATCAAAGTGGGCTGGAGCTGCTTTAAACTTATTCCTTTACATG CTGCACAGTTAT
Genomic sequence	GTGGTGGTTCTCACTCTCATACCACTGTCTGCGTCGCTGGTGTCAGAGAGAATACTGAAATGGA TTATACTTAGTCAATATGTACCAAGAATCATTCGTATGTATCCGCTTTATAAAGAAGTGACAAG AGCCTTTGGTACGGTAGCAGAATCAAAGCGGGTCGGAGCTGCTTTAAACTTCTTCCTTTACATG CTGCACAGTTATGTAAGTCTTTGCTCTTGATCCCACTTCCCACCCACTGTTGGTGTTGTTGTTG TTGCAACTGTGCATGATGGATGGCTACTATATGTATATAGGTGTGTGGGGCTTTTTGGTATTTG AGTTCAATAGAAAGGAAAAGCACATGTTGGCGTGCCGCGTGTGCTAGGACATCCGACTGCAATC TCACGGTCACGGATCTGCTTTGTAAACGAGCTGGTAGTGACAACATTCGTTTTCTCAACACCTC ATGCCCATTAATCGACCCTGCCCAAATCACAAACTCCACAGACTTCGACTTTGGTATGTATATT GATGCGTTGAAGTCAGGGGTCCTAGAGGTGAAACCAAAGGATTTTCCCAGGAAATTCGTCTATT GCTTTTGGTGGGGTCTCCGTAATATTAGGTACTAAATTGTATTATGCTAAACTCTCTGCCGTGA GACATATATCAATCCACTTGATAGATTAATCCGCTCTACAGTGCTTTGGGCCAAAACCTGGAGA CAAGCAACTCTGCAGGGGAGATTTTCTTTGCTATCATCATATGTGTCTCTGGTTTACTCTTGTT TGCTGTGCTCATTGGAAACGTTCAGGTAATGTTCATACCTTAGAACTAGAGTTTGATCTCATAA AGCTGATTCTTAATAGATGTTTGTTTTTGGTGATCGCAGAAGTACTTGCAATCATCTACGACTA GAGTAGATGAAATGGAAGAGAAAAAGAGAGACACAGAAAAATGGATGTCCTATCGGGAGATACC AGAGTATTTGAAGGAACGCATTAGGAGATTTGAAGATTACAAATGGAGAAGAACCAAAGGCACC GAAGAGGAAGCTCTTCTTCGTAGTCTTCCAAAAGACCTCAGACTCGAAACCAAACGCTATCTTT TTCTCAAGTTGCTCAAAAAGGTAACCTTTTATTTTGTCCCATCATAACTTAACCAACTCCTCTT GAATTCACTGTTTTGTTTTGTTTCAGGTGCCTTTGCTCCAAGCTATGGATGATCAGTTACTAGA TGCTCTATGTGCTCGTCTCAAAACGGTTCATTATACAGAGAAGAGTTACATTGTGCGTGAAGGT GAACCAGTGGAGGATATGTTGTTTATAATGAGAGGAAATTTAATCAGCACCACTACTTATGGTG GCAGAACTGGTTTCTTCAATTCTGTTGACTTAATTGCTGGTGATTCCTGTGGAGATCTTCTCAC TTGGGCATTATATTCTCTTAGTTCCCAGTTCCCTATCTCTAGTAGAACCGTTCAAGCGTTGACA GAAGTCGAAGGCTTTGTTATCTCAGCTGATGATCTCAAGTTTGTCGCTACTCAGTATCGTCGCC TCCATAGCAAGCAACTCCAACACATGTTCAGGTAATATTTTCAATTGAAAAAATGCATGTTGAG TTAATCATATTGGATAATGATGACATATCGTATACCTATCTCGTTTCTCAAGTTACCTTCAACA TAATAACCCAAAATCTTTTTATCACCTACCTTGTATCTTGTTTCTCAAGTTACCTTTAATATTA TAATCTAAACAACTTTTTGTCTCCAGGTTTTATTCATTGCAATGGCAGACATGGGCAGCATGTT TTATACAAGCAGCATGGAAGAGACATTGTAGAAGGAAGCTCTCAAAGGCTTTACGTGAAGAAGA AGGCAAACTACATAACACTCTTCAGAACGATGATTCAGGAGGCAATAAACTTAACTTAGGTGCT GCGATTTATGCGTAGAGGTTTGCTTCTCATGCTCTGAGGAATCTAAGAGCAAATGCAGCAGCCC GAAATTCTAGATTCCCACACATGTTAATTTTGTTGCCTCAGAAACCAGCCGATCCTTAGTTTCC TATGGATGAAACCTAGTTTTGTATAGTTGTTGACTCTATCTCTCTGTAATGTGATCGCTAGTGA TTTCTTGCAAATAACTTTTGTGTAAACCAGTAAAGATATTTTTATGTGAAATAATAATCAATAG GAAAATTTCTTATAGAGTTTAGTAAAAAAACAATTTTAATGGAGACGTTTTAGCGAATACTCAC CACCTCAACCACTGTAAATGTTTTGTTATCCAAAAACTTCTAATTCCTAAGCTTTTAACTTTTA AAGCATCTCTCGTTAAACAATTTGTATTTTTTTGCAAAACAAAAATAAAACGCTGTATTTTTAA ATTAGAATCCTTAAGGTTGGGTATTTTTAAGTGAATCAAAAATTCCAACCAAAGTAATGGAACT AAATAACTGTTTTTTATTAGAAAACTGAATACGTACATATACCAAAGTACATAATAAAACTAGT TCTATTATTGATATATATAAATTAAACACAGATTTAGATTATATTTAAACACATAGCTAAGATT GTTTACTAGAGAGACTTAATTAGGTCTCTCTATTGGTGGTCTAGCTTGGCTTCACTCTCGAATT GAAGAGGAACAACGTGTTTGTTTAGTCTTTTTAGGACTTACAATTACGTCTCTGTTGTTTAGTA ACGATGGCAAATAAAAATAATGATTTAGTATATTTGAACATGGTCCCAAATGGGCAAGTTGTAA AAAGAAGACAAGTAGAGAAAATTCAAAATTGGATTTCGTGGATATTATTGTAAGTTGCAGGGAA AAAAGAGTGAGACTGCCCCACCGTAGACTAAAATGATTTAGCTTACCACTCTCACTCTGCATCC ACAGTTTAATAATTACCCCTTTAATATTTTAATCATTATTTTAGTAGACCAAAACTGTTTAGTG TTGAAACTTGTGCATCCACATGAGTGTTGGTTAAAGGTTGAGAACATCGATTTGCCAACCATAT CTCACAGCCACAGCCATTTTTATTCTCTCTCGGTCTCTCTTCTCAGTCTCTCACTACCACAGCC TTAAGTTCGAGAAGACCGAAGTGGACTTCATTTTCTTGTACGGGAATTAAAATATTGCAGATTG ACGACATATACTAACATGAATCATCGGAGGAGTAAATTTGCCAGGTACTTCTTCGAAGTTTTGA TTAACTACTATTTCATATTTGGTTGTGATAGTGATCATTGTTGATACAGGATAGATAGTATGGG AGTTGATGGAAAATTGAAAAGTGTTAGAGGACGCTTGAAGAAGGTTTACGGGAAGATGAAAACA CTCGAAAACTGGAGGAAGACCGTCTTGTTAGCTTGCGTGGTTGCTTTGGCTATTGATCCTTTGT TTCTGTTTATCCCTTTGATTGATTCTCAGAGATTTTGCTTCACTTTCGACAAGACACTTGTAGC AGTAGTTTGTGTCATTCGTACTTTTATTGACACGTTCTATGTGATTCACATCATTTATTATCTT ATAACCGAGACCATTGCTCCTCGTTCTCAAGCATCTTTGAGAGGCGAGATTGTCGTGCATTCTA AGGCTACACTGAAAACACGTCTCCTCTTTCACTTCATTGTTGACATTATCTCTGTTCTCCCCAT TCCTCAGGTATTGTTCCCTTCGTTTGTGTGTGCATGACATCTACTTTTCCATGCTTTTTATTAG AGATGTACATGCGTAATTATAGGTGGTGGTTCTCACTCTCATACCACTGTCTGCGTCGCTGGTG TCAGAGAGAATACTGAAATGGATTATACTTAGTCAATATGTACCAAGAATCATTCGTATGTATC CGCTTTATAAAGAAGTGACAAGAGCCTTTGGTACGGTAGCAGAATCAAAGTGGGCTGGAGCTGC TTTAAACTTATTCCTTTACATGCTGCACAGTTAT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.34398306

Conservation Information
Conserved circRNAs	NA
PMCS	0.34398306

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of 2_circ_ag.8

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