Detail information of Os06g0255100_circ_igg.1


General Information
CircRNA Name Os06g0255100_circ_igg.1
ID in PlantcircBase osa_circ_030422
Alias NA
Organism Oryza sativa
Position chr6: 8034209-8038930  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads 2
Tissues seed
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCCAGGATTGTAAAAGATGGCGCTTGAAACTCTGGCTTCTTCATGCGACTTCATTACTACCCG
GTGTTCCACACTCTTGTACTTATCATTAGACATGATctgcaataggtccccaacattgatcata
agagcgccgggcacaggcttcgcatctacccagtagctctccccatcctcgttcgtgtgcttca
cctgcagg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGCAATAGGTCCCCAACATTGATCATAAGAGCGCCGGGCACAGGCTTCGCATCTACCCAGTAG
CTCTCCCCATCCTCGTTCGTGTGCTTCACCTGCAGGCCACCGACATCATCCTGCGCGAGGATGG
TGAGCACGACGGGGTCCGTGTGCGGGACGACCCCCATGGTGCGCTCGGGCTCAGGGCACACCGG
GTAGTAGTGGCACACCATCACTCTCCCCTCGAGGCAGGAGGCCTCCTCCAGCGCGTCGGCGGCG
AGGCCGAGCCCCTCGCAGAGCAGCGCCATGACGGCGCGGGACACGGCGGTGGCGTGCGCGTCCC
AGCCGACGACCTCGGCGCGGCACGCCGCCGGGATGCGCCCCGTGTCGGGGCGCGAGGGCCCGAA
CGTGACCTCGATGGTGTCGCGCCAGCTCGCGGCGCCGGACCGGTACAGGTCGAAGTTGGAGAAG
TAGTCCACCCCGCCGTCCACGGAGCGGCCGTAGTGCGCGGCGCGCTCCGTGGCCGGGAGTTCGT
TGAAGGCGCGCGTGGCGGCGAGGAGCCCGTCGGTGAAGCCGGGGGGGACGAGGGCGTGGTGGTT
GACGAGGTAGAAGAACCCCCACTCGCGCGCGGCCCCCGCCGCGGCCTCGGCGGCGAGCGGCGCG
GGGAGGGAGAGGTCGACGACGGGGATGGAGACGCCGGGTGGAGCGAGCGGGACGGAGGCGTAGG
GGTCGGGGTGGCGGAAGATGTCCGGGACGGCGGAGACACCGGACTCGACGAGGCCGCGGACGCC
GGTGCGTGTCTCGTCGAAGGCCTTGACGAGGGCGGCGCGGCCCGTTGCCGCGGCGGCGGCGGCG
GAGGACGCCATGGTCGCCGCCTCGCCGGCTTGATGACGAACTGGATAGCTTTCGTGTGGATTGA
GACAGATAACAGAACAGAGTTGAGAGAGAAAAGAAATCAAGAGAGAATTGCATCTACACCAGAA
ACATTTGGATGGTAGCAGCAGCAGCAGTTGTGGTCATGATGAAGCTACTTGGAGGCATGGGCTT
GCGAGCGAGCGAACGGCATCGTTGGCGGTGGAATGGCTCAGAGGCTCAGAGCTAGGAAAGTGAG
GAGGAGGGCGAAGGAGTCAGCACTCAGCAGCGGGAGGGCAAGCGGCTGCGGCGCCATGGTCTTC
GTCGTCCTGCCAAACAACCGCCATGGATTCCGTAGGTAGTGAAGAGTGGCTGGGTCGCCATCGG
TGGGCGGCGGCGCTTGAAAGAGGTTGAAAAGGAAGCCGATGAAGTTGAGATATTTAATTATTTG
CCACTGTTACAAATCCTTAATTACCACATTTTAAAAGTGGCAAAAAGTTAAATGACCCAATAAA
GTTAAAGAATAAGGAAGAAAATATATTTTTTATATTCCGTGTTAACAGAAAGTAACATAGTCGC
GGTAACACTATTGTGGTATGGGAGGCCTTTTTTTTACCGTATTTAGATTTGTCTGTGTAGCTTA
AAATTATAAGAAAGAAACAGCTAATGAGAATATAGAGAAACTGGGAAACACAGAGTTTAACTTC
TAAGAATATATAGTTAATCCAGAAAATAAACTAGTTTATTTCTGGATTTTTACAACTACTACAA
GTTATCAGAATCTGTGTGAAAATCCGAACCATTTAGGGAGAATCTCTATATACCAGAATCTCCC
CCAAACAGAGCATTAGAAACTATATTTTCAATTGAATATAAACATACTTAAAATAAGATCATTA
GCGTAAAATAAATTTTATTTTAATTATTACAAACGTCTATATATAAAATTTCAATGGGTTTATT
TGATATTTTAAAACAATCTCCATATAAATTTTTTTCGCTCCAAACGTCTCGTTTAGCAGTTTGA
AAAACGTGCTAACAAAAATAAGATAAAATTCGTATCTTAACTAGAAAAAAATACCATCTAAATA
TTGGTGGTATCCGTAATTTTCTTTCAAAAAAAAAGGAACCAACAGCAACGACAAACAAACATAC
TCCTTTTTTTCCATTAAAACTAAATCTATTACGAAACATGGTATATGCTAGTAATACAAATTTG
AATAATCTTCTTTAGATTTATAGCACTATAATGTATCACATCCCGTATTTCTTTTTAACAGGAA
GATGTGCTAGCAAGCAGAGAGTTTGGTGGAATCATGATAGTGACCCAACTTGGTAGACGAAGTT
CCTCATGCCCTATAATCTTCAGGTAGGATCGAAGGAGTATCAATCAATACAAAGTCCCTCACAT
CACACTCGGTTTGATTTGTTATTTTTCTTTGATTTTCAGGAAATATAGTGTTTTATAGACTATA
AACAATCTAATGTCTTAAAACTAACTCACAATTGAAGCTATGAGAGCATTTTGCGCTTGTGTGG
CCACCGCCACGTTGCGACACAGTACCACGCACTAGAACTCAGTGGGATTCTTTTTGCAAAAAGA
AAAACCTCTCTTTTATTGAAATTTTGTTACAAATTTCTTATTGTATGATTTCCGGTTTTTTTTG
TCTTTAGGCCCTCCATGTCGTGGAATATCCAATATTAAGAAGAAAAAAATTGAAAAATAGGACC
ATGTTTGGAAACATGGAAAACTAGGATGTTCTTAAGTAAAATCTTGCATCCCTATCCCCTTTCC
CCCAAAACCCTAACTGCCATTGTTCCCCCGCCCCTTTCCTCTCGCTCACTCTCTTCCCTAGCCG
TCGCTGCCACCTCCTCCTCACACCCTCCCTCCTCCGCTTTGGTTGGTCGCTTACTCCTAGCTTG
CTTCGCCACCAATGTCCACTCTCACAGCGCCGCATCGAAAAAAGATAGAAGAAGCACAACAAAG
CAACAGAATGCATCTGTAGTCATCTCTCACATTTATTTTTTTTAATATACTTGATGTGCATAAA
GCAAACGGAAAGAAAATGCATGTATAGCTAGTGAGAGACTTCGAGGGCTTCATTCTAGTAGCTA
AACTTCTGATAGTTTCAATGAATGAGTGCTGGACAGCGTAGCCGCGTATAGAGACGAGATCCAA
CCATTCATCTATGCGGCCGGTCGTGATAGCTTGGGCAAGGCGGGACGGCAACCGCGATGCGCGA
GCATGTTTCAGGGGTAGTGCTTGCTTGAAGAAAAGACAGGAGGCCATCAGACAGTTCAGAGAGG
CCATGTTAAATTGTGTAGTACAGAGACATACTATAAATATTGGTTTATTATATTGAGTTTCATA
CTATGAATATTGGTTTATTATATTGAGTTTCAGTGTACCTGTTGTCAACACTTATCCTTGAAAG
GTGGAAAATACATTAAAGTGATATATTGAATTTTGGACTCTATCCTTACGGCATACCCTCAAAT
CTATTTGTTGTTTAACGATGATTCCCCCTTAGGATCTATTTGATGTTTTACAATGATTCTCTGG
AGGATCATTCAAGGGAGGGAAGCAATGCACTCGTGCCAATAGAACACACACATATTCTATTGCT
AAACAGACCACGTGCACATAGGCATGAGCACATCACACACGTGTGCACATATATCTAAACCATA
TATTATAGTCACAAATGGCTTATTAACCATATGTTATAGTTAGAGATGAATTTTCTTTTCTGAA
CTGTTAACTATTACTCCCCCTTTTCATATTATAAATCGTTTTGACTTTTTTAAAGTCAAACTTC
TTGAATGTTTGACCAAAATTATAAAAAAATATAGTATCATTTATAACACCAATTTAGTTTTATT
ACATCCAACATTGAAAATATCTTGATAGTTTCTTTGTTTTGTGTTGAAACTATGTTAAATCTAA
AAACATTAACTTTAAAAAAAGTCAAAACAACTTATAACGTGAAACGGAGATAGTATCATTGAAA
GCAATACTGCAAGCGGACTAATCAGCCTGCCAGCTGGACTCGCTGGCTCAGTTCCAAGCCCACC
GCTGCATTTAGTATTTATTTACAGAATACAGATGCATTGTGCAGAAAACATAGAAAGGATAAAA
TCGAGACTATTATGAGGTATGGAGGTATAATAATTTTCCTACACATAGAAGTATCAAATACCAT
TATTGGCATGGCATGGCTACATGTACATACATCCAAGCTTTGAATGGCAACATTTATAAAATCC
TGTAGTAGTGATCGATTTGCAAGTTCTAGTCCAAAAAGTTCCACGAAAAATCAGACATGTTAAA
ACTTATTTACATTGCTGGGCTGCGCAAATAAACCAGCTCTTGAAATGGTTGTACAATCTAGCAT
CCATGTGAGGCATATACAAAAGATACAAAGGCACGACTTTTATGATCAAGTAGAACCATGGCAT
TACATTATCGGCAACGGCATCAATGTAGTTTATAGAAGTTTAAACCTTTTATCTATTTGAAGAA
CACTCTATGAGGCTTTTATGATTAAGAAGTAGAACACCAACATCACACTATCAGTATCGACATC
TACAAAGTTCACAGAAGTTTAAACCTTTTTATCTGCAACATTTGAATAACTTTATATTTTGAAG
TGCTCGATGAGAGCTTTGCTCGCAAGGTCTCGTTTAAAGAAGGCCCCCAGAAACTCAGACATAG
TAAAATTCCTGTACTTTGGTGGGTTTCCCGAAGAAATCAGATCTGGCAATGGTCCATAAAAAAC
AGAGTCGCCTCTCTTGCCAGGATTGTAAAAGATGGCGCTTGAAACTCTGGCTTCTTCATGCGAC
TTCATTACTACCCGGTGTTCCACACTCTTGTACTTATCATTAGACATGAT
Conservation Information
Conserved circRNAs NA
PMCS 0.499862343
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017