Detail information of Os09g0437500_circ_g.6


General Information
CircRNA Name Os09g0437500_circ_g.6
ID in PlantcircBase osa_circ_039308
Alias NA
Organism Oryza sativa
Position chr9: 16153794-16153870  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os09g0437500
Parent gene annotation Dormancyauxin associated family protein. (Os09t0437500-01)
Parent gene strand +
Alternative splicing Os09g0437500_circ_g.4 Os09g0437500_circ_g.5 Os09g0437500_circ_g.7
Support reads 1
Tissues leaf
Exon boundary   No-No
Splicing signals   TT-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTTTTTGCACACGCATATATCGTAATCTCGATCTTAAgtggtgaccaggccaccataatctct
tcttgaatcttga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGGTGACCAGGCCACCATAATCTCTTCTTGAATCTTGATCTTTTTGCACACGCATATATCGTA
ATCTCGATCTTAA
Conservation Information
Conserved circRNAs NA
PMCS 0.191558442
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017