Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT5G01770_circ_g.2 |
ID in PlantcircBase | ath_circ_035934 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr5: 299378-301060 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | AT5G01770 |
Parent gene annotation |
Regulatory-associated protein of TOR 2 |
Parent gene strand | - |
Alternative splicing | AT5G01770_circ_g.3 AT5G01770_circ_g.4 |
Support reads | 2 |
Tissues | seedlings |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT5G01770.4:6 AT5G01770.1:6 AT5G01770.5:6 AT5G01770.3:6 AT5G01770.2:6 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.153850174 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
299605-299380(-) |
Potential amino acid sequence |
MRSGNCTPISHPMLPPTHQHHMWDAWDMAAEICLSQLPQFFLDPNTEFQARYKVELDPTKDDVR KLCLSCRKYAKTERVLFHYNGHGVPKPTPNGEIWVYNKNFTQYIPLPVSELDSWLKTPTIYVFD CSAARVILNAFAELHEGESSGPPKDCILLAACDVHETLPQSVEFPADVFTSCLTTPINIALKWF CRRSLLKEFIDESLIDRIPGRQNDRKTLLGELNWIFTAVTDTIAWNVLPRELFQRLFRQDLLVA SLFRNFLLAERIMRSGNCTPISHPMLPPTHQHHMWDAWDMAAEICLSQLPQFFLDPNTEFQARY KVELDPTKDDVRKLCLSCRKYAKTERVLFHYNGHGVPKPTPNGEIWVYNKNFTQYIPLPVSELD SWLKTPTIYVFDCSAARVILNAFAELHEGESSGPPKDCILLAACDVHETLPQSVEFPADVFTSC LTTPINIALKWFCRRSLLKEFIDESLIDRIPGRQNDRKTLLGELNWIFTAVTDTIAWNVLPREL FQRLFRQDLLVASLFRNFLLAERIMRSGNCTPISHPMLPPTHQHHMWDAWDMAAEICLSQLPQF FLDPNTEFQARYKVELDPTKDDVRKLCLSCRKYAKTERVLFHYNGHGVPKPTPNGEIWVYNKNF TQYIPLPVSELDSWLKTPTIYVFDCSAARVILNAFAELHEGESSGPPKDCILLAACDVHETLPQ SVEFPADVFTSCLTTPINIALKWFCRRSLLKEFIDESLIDRIPGRQNDRKTLLGELNWIFTAVT DTIAWNVLPRELFQRLFRQDLLVASLFRNFLLAERIMRSGNCTPISHPMLPPTHQHHMWDAWDM AAEICLSQLPQFFLDPNTEFQ(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Pan et al., 2017 |