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circRNA ID
Zm00001d011560_circ_g.1
Alias
zma_circ_006420, Zm08circ00067
Organism
Zea mays
Position
chr8: 154466143-154466428  JBrowse»
Reference genome
AGPv4.38
Type  
u-circRNA
Identification method
CIRI, CIRCexplor2
Parent gene
Zm00001d011560
Parent gene annotation
Homeobox-DDT domain protein RLT1
Parent gene strand
+
Alternative splicing
NA
Splice junction sequence  
AACCTTAGTTCTGTTCCTGTTGAAGGCCAGTTTGATACGTCTCAGGTTGCTGCATTTGAAGACC
CACCTGTATCGTCTGAAAGAAGAGCTTATCATGATGgaagcttcaaattccaggataccttctc
tcacatcaggatcacaacttctccatggatctgaggaggctgcgcctagttatgcttttcaagg
tcacacat
Support reads
NA
Tissues
leaf
Exon boundary  
No-No
Splicing signals  
AA-TG
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
GAAGCTTCAAATTCCAGGATACCTTCTCTCACATCAGGATCACAACTTCTCCATGGATCTGAGG
AGGCTGCGCCTAGTTATGCTTTTCAAGGTCACACATCTGGTTCTAGCCTGTTGCCTCCTTCCAG
CAGGCCCCAGGTGTTTCCAGTAGCACCAACAGATTATGAGATGACCCAGTTTAATAGCAACCTT
AGTTCTGTTCCTGTTGAAGGCCAGTTTGATACGTCTCAGGTTGCTGCATTTGAAGACCCACCTG
TATCGTCTGAAAGAAGAGCTTATCATGATG
Number of exons covered
Zm00001d011560_T039:1
Zm00001d011560_T023:1
Zm00001d011560_T009:1
Zm00001d011560_T017:1
Zm00001d011560_T033:1
Zm00001d011560_T007:1
Zm00001d011560_T036:1
Zm00001d011560_T027:1
Zm00001d011560_T012:1
Zm00001d011560_T016:1
Zm00001d011560_T041:1
Zm00001d011560_T043:1
Zm00001d011560_T006:1
Zm00001d011560_T028:1
Zm00001d011560_T049:1
Zm00001d011560_T048:1
Zm00001d011560_T014:1
Zm00001d011560_T026:1
Zm00001d011560_T010:1
Zm00001d011560_T032:1
Zm00001d011560_T031:1
Zm00001d011560_T008:1
Zm00001d011560_T045:1
Zm00001d011560_T020:1
Zm00001d011560_T029:1
Zm00001d011560_T021:1
Conserved circRNAs
NA
Coding potential
Y
Potential coding position
154466388-154466201(+)
154466580-154466201(+)
Potential amino acid sequence
MTQFNSNLSSVPVEGQFDTSQVAAFEDPPVSSERRAYHDGSFKFQDTFSHIRITTSPWI*
MMEASNSRIPSLTSGSQLLHGSEEAAPSYAFQGHTSGSSLLPPSSRPQVFPVAPTDYEMTQFNS
NLSSVPVEGQFDTSQVAAFEDPPVSSERRAYHDGSFKFQDTFSHIRITTSPWI*
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Han et al., 2020

Copyright©2017-2021 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2021-03-09.

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