Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d027472_circ_g.5 |
ID in PlantcircBase | zma_circ_006374 |
Alias | Zm01circ00019, zma_circ_0000029, ZmciR87 |
Organism | Zea mays |
Position | chr1: 6125517-6125981 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | CIRI2, find_circ |
Parent gene | Zm00001d027472 |
Parent gene annotation |
Callose synthase 3 |
Parent gene strand | - |
Alternative splicing | Zm00001d027472_circ_g.1 Zm00001d027472_circ_g.2 Zm00001d027472_circ_g.3 Zm00001d027472_circ_g.4 |
Support reads | NA |
Tissues | leaf, endosperm, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d027472_T002:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.135331152 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
6125917-6125555(+) 6125594-6125541(+) 6125950-6125519(-) 6125919-6125947(-) |
Potential amino acid sequence |
MPPKRMYGGLHDNLGGFNKRFDLSEPLESTVNSTK*(+) MKYTRMIGAQIAITTPILLFSLGKNSCHRNVCMGVFMITLVGSTRGLISPSRWKAP*(+) MKTPIHTFRWHEFFPREKSNIGVVIAIWAPIILVYFMDTQIWYTIFSTLLGGIYGAFQRLGEIK PLVEPTKVIMKTPIHTFRWHEFFPREKSNIGVVIAIWAPIILVYFMDTQIWYTIFSTLLGGIYG AFQRLGEIKPLVEPTKVIMKTPIHTFRWHEFFPREKSNIGVVIAIWAPIILVYFMDTQIWYTIF STLLGGIYGAFQRLGEIKPLVEPTKVIMKTPIHTFRWHEFFPREKSNIGVVIAIWAPIILVYFM DTQIWYTIFSTLLGGIYGAFQRLGE(-) MNFSQEKRAISVLLLQFGLQSFWYISWIHKFGIQSSPLYLVEFTVLSNGSERSNLLLNPPRLS* (-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Han et al., 2020; Ma et al., 2021b;Zhang et al., 2019 |