Plant Circular RNA Database

Detail information of Zm00001d024270_circ_g.2

			
						 General Information
					
						CircRNA Name
						Zm00001d024270_circ_g.2
					
						ID in PlantcircBase
						zma_circ_010201
					
						Alias
						Zm10circ00021, zma_circ_0003147, GRMZM2G143568_C1
					
						Organism
						
							Zea mays						
					
						Position
						
							chr10: 60600556-60603209  JBrowse»						
					
						Reference genome
						
							AGPv4.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						CIRI2, find_circ
					
						Parent gene
						
							Zm00001d024270						
					
						Parent gene annotation
						
							RNA-binding KH domain-containing protein
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Zm00001d024270_circ_g.1 						
					
						Support reads
						NA
					
						Tissues
						leaf, endosperm, root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Zm00001d024270_T004:6
Zm00001d024270_T002:5
Zm00001d024270_T006:6
Zm00001d024270_T001:6
Zm00001d024270_T003:6
Zm00001d024270_T005:6

General Information
CircRNA Name	Zm00001d024270_circ_g.2
ID in PlantcircBase	zma_circ_010201
Alias	Zm10circ00021, zma_circ_0003147, GRMZM2G143568_C1
Organism	Zea mays
Position	chr10: 60600556-60603209 JBrowse»
Reference genome	AGPv4.38
Type	u-circRNA
Identification method	CIRI2, find_circ
Parent gene	Zm00001d024270
Parent gene annotation	RNA-binding KH domain-containing protein
Parent gene strand	+
Alternative splicing	Zm00001d024270_circ_g.1
Support reads	NA
Tissues	leaf, endosperm, root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Zm00001d024270_T004:6 Zm00001d024270_T002:5 Zm00001d024270_T006:6 Zm00001d024270_T001:6 Zm00001d024270_T003:6 Zm00001d024270_T005:6

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AATTGTCAGACATGTACCACGTTTGGAAATGACTGTACCTGCTAGTGGCATCTCAAAAGTAATG
GGAAAACATGGCACAAACTTGGACAACATTAGAAAGttaactaaacaatgaggcagcagactgg
taagcgtccctcccaacacagggaatatgaaagagaagaaaggaaggaccaacacaagaggccg
tttccccg

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1778
Transcript exons: 60600556-60601163,60601616-60602116,60602203-60602442,60
602540-60602821,60602930-60602985,60603119-60603209
TTAACTAAACAATGAGGCAGCAGACTGGTAAGCGTCCCTCCCAACACAGGGAATATGAAAGAGA
AGAAAGGAAGGACCAACACAAGAGGCCGTTTCCCCGTGCTCAGGAAAGCTCTAATAATGATGGG
CTGGTTCTTTACCGTATACTCTGTCCAGACAGTTTGATTGGTAGTGTCATAGGAAAGCATGGCA
ATGTGATAAATGCTATCAGGCATCAGACAAGTGCCAAAGTCAAGGTTGTTGACCCGTACCCCGG
TGCAGACAAAAGGGTTATCTTGGTATATTGCTACGTCAAGCATAGAGACCTTGATGCTGAGGGT
GATGACAATGAGCCTGTTTGTGCAGCTCAAGATGCATTACTTAGGGTGCATAATGCAATTGTTG
ATGCACTGCAGACATTACATAAGAATCATAAAGACTCTGATAAGAAGAGCACAGAGGAAGCTAA
CATTCTTGTGCCAGCTAGTCAGGCATCAAATGTTATAGGAAAATCTGGTGCTGTCATCAAGCAT
CTTCGGTCAACATCAAGAGCATTCATTAAAGTGAGCCCAAAAGATCCAAGTGACCCTACACATT
CATGTGCTATGAGTTTTGATAATTTTGTTCAGATAACTGGTGGTGCTGAAGCTGTTAAAAAAGC
ACTGTTTGGAGTATCAACCATCATTTACAAGCACCCATCAAAAGAGAACATTCCTCTTGAAACT
TCAATTCCTGATCCTACTCCAAGCATTATAATCCCTTCAGAACTTCCTGTCTATCCTGCTAGTA
ACTTTTACTCGGCCCCAGATGCTGCTATACCTTCTGTACATCCAAGCATGTCTGTCTTAGGGTC
AACACGTCATGTTCCCGAACTTGCTGTACCTGCCGATGATCATGGTCGGCTGCCTATTTATCAA
TCTATTCTTCCAGTTATTCCTACTTATAGTGCCCCAAAATGTTCAGGAGAACTTGAGTTTCGTG
TTTTATGCCCTGGTGGAAAAATTGGCTTGGTTATTGGAAGAGGTGGGGCTACCATAAAGAATAT
AAGGCAAGAGAGTGGTGCAAGGATAGATGTTGATGATGCAAAGAATGACAAGGAGGAAAGTATC
ATTACCATTATATCCACTGAGTCCACCGATGATGTTAAGTCTGCCGCTGTGGAAGCTGTTTTGC
TGCTTCAAGCCAAGATCAATGATTCTGAGGATGATAGAATGAATCTTCGCCTTCTTGTGCCAAA
TAAGGTTATAGGCTGTCTTATTGGCAGGGGTGGTTCAATAGTCAATGACATGAGGAAGAAGACT
AAGGCAAACATCCTCATTTCGAAGGGCGATAAGCCCCGGAGAGCATCTTCCAGTGATGAACTTG
TTGAGGTATCTGGAGAAGCAGACAAGCTGCGTGATGCTCTTGTTCAGATAATTTTAAGACTTAG
GGAAGCCGTTCTGAAAGAGAGTGTTGAAAGCCAAAATTCTGACAGGGATGGCCAACTAACTGTT
GCTGCCTCTGATTCCTTATATGGAAGCAGTCTTCCTTTGCCTGCATTATTACCTCACAACCAAC
AAATTGCCCCCTTGGGCTATGATAGAAGAGGTGAACCTGAGCGAGCTCTGGAAGTATTCCCTCG
TACCAGTTCGTATGGGTATAGTTCCATGCAGGTCACGGATGATGGCTATGGAGGACTTCCATCC
TATGCATCAAAGGCATATGAAGAACATGTACCACGTTTGGAAATGACTGTACCTGCTAGTGGCA
TCTCAAAAGTAATGGGAAAACATGGCACAAACTTGGACAACATTAGAAAG
						
					

						Genomic sequence
						
							TTAACTAAACAATGAGGCAGCAGACTGGTAAGCGTCCCTCCCAACACAGGGAATATGAAAGAGA
AGAAAGGAAGGACCAACACAAGAGGCCGTTTCCCCGTGCTCAGGAAAGCTCTAATAATGATGGG
CTGGTTCTTTACCGTATACTCTGTCCAGACAGTTTGATTGGTAGTGTCATAGGAAAGCATGGCA
ATGTGATAAATGCTATCAGGCATCAGACAAGTGCCAAAGTCAAGGTTGTTGACCCGTACCCCGG
TGCAGACAAAAGGGTTATCTTGGTATATTGCTACGTCAAGCATAGAGACCTTGATGCTGAGGGT
GATGACAATGAGCCTGTTTGTGCAGCTCAAGATGCATTACTTAGGGTGCATAATGCAATTGTTG
ATGCACTGCAGACATTACATAAGAATCATAAAGACTCTGATAAGAAGAGCACAGAGGAAGCTAA
CATTCTTGTGCCAGCTAGTCAGGCATCAAATGTTATAGGAAAATCTGGTGCTGTCATCAAGCAT
CTTCGGTCAACATCAAGAGCATTCATTAAAGTGAGCCCAAAAGATCCAAGTGACCCTACACATT
CATGTGCTATGAGTTTTGATAATTTTGTTCAGGTAAATTCTCTGGCATCTCATTGTTTGGTAAA
TCAATTGGTGTTTCCCTACTAATGGATAATTATTATTAAAGAGTTGTAGGATATTATATATTTG
CAGTAACTTGTTTGGTTCTCAACTAATGTTTTTGTATTACAACTGTACCATATATTGTGCTTAT
TTTTTATCATCATGGTACAGGAACAGCTGTTTGTTTCTGAAGTTGCAATATCCTAGCACAGTGC
TTCAGATTTTCTTTTTTTTTGACAAAAATGCAAGTTTTAAGCTATATGTTTCCAAACGCATACA
TATTTCACCTGTCCTCTATTTACGGAAGTATGATTTTGTTTGTTGTTCACACTTAAATGTATCA
TGATTAAAATTCCAATCCGCCACCTTCTAAATTCTTCTATGTTCTATAATATCTTTCATCTGTT
GTCATATATGTTCTGCTAATTATTTATGGTAAACAGATAACTGGTGGTGCTGAAGCTGTTAAAA
AAGCACTGTTTGGAGTATCAACCATCATTTACAAGCACCCATCAAAAGAGAACATTCCTCTTGA
AACTTCAATTCCTGATCCTACTCCAAGCATTATAATCCCTTCAGAACTTCCTGTCTATCCTGCT
AGTAACTTTTACTCGGCCCCAGATGCTGCTATACCTTCTGTACATCCAAGCATGTCTGTCTTAG
GGTCAACACGTCATGTTCCCGAACTTGCTGTACCTGCCGATGATCATGGTCGGCTGCCTATTTA
TCAATCTATTCTTCCAGTTATTCCTACTTATAGTGCCCCAAAATGTTCAGGAGAACTTGAGTTT
CGTGTTTTATGCCCTGGTGGAAAAATTGGCTTGGTTATTGGAAGAGGTGGGGCTACCATAAAGA
ATATAAGGCAAGAGAGTGGTGCAAGGATAGATGTTGATGATGCAAAGAATGACAAGGAGGAAAG
TATCATTACCATTATATCCACTGAGGTCAGACCAAACATCCTCAGCTAGGTTTTGCTCTCTTTT
CAGTATCCTGTCGTCTACTCAATTTTAGGTTGTGCCTTCATTTTCAGTCCACCGATGATGTTAA
GTCTGCCGCTGTGGAAGCTGTTTTGCTGCTTCAAGCCAAGATCAATGATTCTGAGGATGATAGA
ATGAATCTTCGCCTTCTTGTGCCAAATAAGGTTATAGGCTGTCTTATTGGCAGGGGTGGTTCAA
TAGTCAATGACATGAGGAAGAAGACTAAGGCAAACATCCTCATTTCGAAGGGCGATAAGCCCCG
GAGAGCATCTTCCAGTGATGAACTTGTTGAGGTAAGAGTTCTCATTTGTGTTATCAGTTTAAAA
TTTTAAATAGCCTTGGTAGCAAGATCTCTCAAATAGTCAAATGTCAAATGGTTAATGTGTGTAG
GTATCTGGAGAAGCAGACAAGCTGCGTGATGCTCTTGTTCAGATAATTTTAAGACTTAGGGAAG
CCGTTCTGAAAGAGAGTGTTGAAAGCCAAAATTCTGACAGGGATGGCCAACTAACTGTTGCTGC
CTCTGATTCCTTATATGGAAGCAGTCTTCCTTTGCCTGCATTATTACCTCACAACCAACAAATT
GCCCCCTTGGGCTATGATAGAAGAGGTGAACCTGAGCGAGCTCTGGAAGTATTCCCTCGTACCA
GTTCGTATGGGTATAGTTCCATGCAGGTATGCTTTGTGATTTTGCATCAGTTTTCCCTTTTCCT
CCTTTGGTTTTAGGCATTCCTTGATATCTATGAATTCATTCTCATCTTAATTGTTGACATCCTC
GACCAGGTCACGGATGATGGCTATGGAGGACTTCCATCCTATGCATCAAAGGCATATGAAGAGT
ATGTTTCAACTGAACTTGCAATAAATCTTGTTCTTATTCTACAATGTTAGTCTTCCTTTTAGTT
ATTGCTCTCTATTCAGTTTGATACTTGCAATTACAATACTTTTTTTTTGCTAAATATCAATTGT
CAGACATGTACCACGTTTGGAAATGACTGTACCTGCTAGTGGCATCTCAAAAGTAATGGGAAAA
CATGGCACAAACTTGGACAACATTAGAAAG
						
					

			
		

Sequences
Splice junction sequence	AATTGTCAGACATGTACCACGTTTGGAAATGACTGTACCTGCTAGTGGCATCTCAAAAGTAATG GGAAAACATGGCACAAACTTGGACAACATTAGAAAGttaactaaacaatgaggcagcagactgg taagcgtccctcccaacacagggaatatgaaagagaagaaaggaaggaccaacacaagaggccg tttccccg
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1778 Transcript exons: 60600556-60601163,60601616-60602116,60602203-60602442,60 602540-60602821,60602930-60602985,60603119-60603209 TTAACTAAACAATGAGGCAGCAGACTGGTAAGCGTCCCTCCCAACACAGGGAATATGAAAGAGA AGAAAGGAAGGACCAACACAAGAGGCCGTTTCCCCGTGCTCAGGAAAGCTCTAATAATGATGGG CTGGTTCTTTACCGTATACTCTGTCCAGACAGTTTGATTGGTAGTGTCATAGGAAAGCATGGCA ATGTGATAAATGCTATCAGGCATCAGACAAGTGCCAAAGTCAAGGTTGTTGACCCGTACCCCGG TGCAGACAAAAGGGTTATCTTGGTATATTGCTACGTCAAGCATAGAGACCTTGATGCTGAGGGT GATGACAATGAGCCTGTTTGTGCAGCTCAAGATGCATTACTTAGGGTGCATAATGCAATTGTTG ATGCACTGCAGACATTACATAAGAATCATAAAGACTCTGATAAGAAGAGCACAGAGGAAGCTAA CATTCTTGTGCCAGCTAGTCAGGCATCAAATGTTATAGGAAAATCTGGTGCTGTCATCAAGCAT CTTCGGTCAACATCAAGAGCATTCATTAAAGTGAGCCCAAAAGATCCAAGTGACCCTACACATT CATGTGCTATGAGTTTTGATAATTTTGTTCAGATAACTGGTGGTGCTGAAGCTGTTAAAAAAGC ACTGTTTGGAGTATCAACCATCATTTACAAGCACCCATCAAAAGAGAACATTCCTCTTGAAACT TCAATTCCTGATCCTACTCCAAGCATTATAATCCCTTCAGAACTTCCTGTCTATCCTGCTAGTA ACTTTTACTCGGCCCCAGATGCTGCTATACCTTCTGTACATCCAAGCATGTCTGTCTTAGGGTC AACACGTCATGTTCCCGAACTTGCTGTACCTGCCGATGATCATGGTCGGCTGCCTATTTATCAA TCTATTCTTCCAGTTATTCCTACTTATAGTGCCCCAAAATGTTCAGGAGAACTTGAGTTTCGTG TTTTATGCCCTGGTGGAAAAATTGGCTTGGTTATTGGAAGAGGTGGGGCTACCATAAAGAATAT AAGGCAAGAGAGTGGTGCAAGGATAGATGTTGATGATGCAAAGAATGACAAGGAGGAAAGTATC ATTACCATTATATCCACTGAGTCCACCGATGATGTTAAGTCTGCCGCTGTGGAAGCTGTTTTGC TGCTTCAAGCCAAGATCAATGATTCTGAGGATGATAGAATGAATCTTCGCCTTCTTGTGCCAAA TAAGGTTATAGGCTGTCTTATTGGCAGGGGTGGTTCAATAGTCAATGACATGAGGAAGAAGACT AAGGCAAACATCCTCATTTCGAAGGGCGATAAGCCCCGGAGAGCATCTTCCAGTGATGAACTTG TTGAGGTATCTGGAGAAGCAGACAAGCTGCGTGATGCTCTTGTTCAGATAATTTTAAGACTTAG GGAAGCCGTTCTGAAAGAGAGTGTTGAAAGCCAAAATTCTGACAGGGATGGCCAACTAACTGTT GCTGCCTCTGATTCCTTATATGGAAGCAGTCTTCCTTTGCCTGCATTATTACCTCACAACCAAC AAATTGCCCCCTTGGGCTATGATAGAAGAGGTGAACCTGAGCGAGCTCTGGAAGTATTCCCTCG TACCAGTTCGTATGGGTATAGTTCCATGCAGGTCACGGATGATGGCTATGGAGGACTTCCATCC TATGCATCAAAGGCATATGAAGAACATGTACCACGTTTGGAAATGACTGTACCTGCTAGTGGCA TCTCAAAAGTAATGGGAAAACATGGCACAAACTTGGACAACATTAGAAAG
Genomic sequence	TTAACTAAACAATGAGGCAGCAGACTGGTAAGCGTCCCTCCCAACACAGGGAATATGAAAGAGA AGAAAGGAAGGACCAACACAAGAGGCCGTTTCCCCGTGCTCAGGAAAGCTCTAATAATGATGGG CTGGTTCTTTACCGTATACTCTGTCCAGACAGTTTGATTGGTAGTGTCATAGGAAAGCATGGCA ATGTGATAAATGCTATCAGGCATCAGACAAGTGCCAAAGTCAAGGTTGTTGACCCGTACCCCGG TGCAGACAAAAGGGTTATCTTGGTATATTGCTACGTCAAGCATAGAGACCTTGATGCTGAGGGT GATGACAATGAGCCTGTTTGTGCAGCTCAAGATGCATTACTTAGGGTGCATAATGCAATTGTTG ATGCACTGCAGACATTACATAAGAATCATAAAGACTCTGATAAGAAGAGCACAGAGGAAGCTAA CATTCTTGTGCCAGCTAGTCAGGCATCAAATGTTATAGGAAAATCTGGTGCTGTCATCAAGCAT CTTCGGTCAACATCAAGAGCATTCATTAAAGTGAGCCCAAAAGATCCAAGTGACCCTACACATT CATGTGCTATGAGTTTTGATAATTTTGTTCAGGTAAATTCTCTGGCATCTCATTGTTTGGTAAA TCAATTGGTGTTTCCCTACTAATGGATAATTATTATTAAAGAGTTGTAGGATATTATATATTTG CAGTAACTTGTTTGGTTCTCAACTAATGTTTTTGTATTACAACTGTACCATATATTGTGCTTAT TTTTTATCATCATGGTACAGGAACAGCTGTTTGTTTCTGAAGTTGCAATATCCTAGCACAGTGC TTCAGATTTTCTTTTTTTTTGACAAAAATGCAAGTTTTAAGCTATATGTTTCCAAACGCATACA TATTTCACCTGTCCTCTATTTACGGAAGTATGATTTTGTTTGTTGTTCACACTTAAATGTATCA TGATTAAAATTCCAATCCGCCACCTTCTAAATTCTTCTATGTTCTATAATATCTTTCATCTGTT GTCATATATGTTCTGCTAATTATTTATGGTAAACAGATAACTGGTGGTGCTGAAGCTGTTAAAA AAGCACTGTTTGGAGTATCAACCATCATTTACAAGCACCCATCAAAAGAGAACATTCCTCTTGA AACTTCAATTCCTGATCCTACTCCAAGCATTATAATCCCTTCAGAACTTCCTGTCTATCCTGCT AGTAACTTTTACTCGGCCCCAGATGCTGCTATACCTTCTGTACATCCAAGCATGTCTGTCTTAG GGTCAACACGTCATGTTCCCGAACTTGCTGTACCTGCCGATGATCATGGTCGGCTGCCTATTTA TCAATCTATTCTTCCAGTTATTCCTACTTATAGTGCCCCAAAATGTTCAGGAGAACTTGAGTTT CGTGTTTTATGCCCTGGTGGAAAAATTGGCTTGGTTATTGGAAGAGGTGGGGCTACCATAAAGA ATATAAGGCAAGAGAGTGGTGCAAGGATAGATGTTGATGATGCAAAGAATGACAAGGAGGAAAG TATCATTACCATTATATCCACTGAGGTCAGACCAAACATCCTCAGCTAGGTTTTGCTCTCTTTT CAGTATCCTGTCGTCTACTCAATTTTAGGTTGTGCCTTCATTTTCAGTCCACCGATGATGTTAA GTCTGCCGCTGTGGAAGCTGTTTTGCTGCTTCAAGCCAAGATCAATGATTCTGAGGATGATAGA ATGAATCTTCGCCTTCTTGTGCCAAATAAGGTTATAGGCTGTCTTATTGGCAGGGGTGGTTCAA TAGTCAATGACATGAGGAAGAAGACTAAGGCAAACATCCTCATTTCGAAGGGCGATAAGCCCCG GAGAGCATCTTCCAGTGATGAACTTGTTGAGGTAAGAGTTCTCATTTGTGTTATCAGTTTAAAA TTTTAAATAGCCTTGGTAGCAAGATCTCTCAAATAGTCAAATGTCAAATGGTTAATGTGTGTAG GTATCTGGAGAAGCAGACAAGCTGCGTGATGCTCTTGTTCAGATAATTTTAAGACTTAGGGAAG CCGTTCTGAAAGAGAGTGTTGAAAGCCAAAATTCTGACAGGGATGGCCAACTAACTGTTGCTGC CTCTGATTCCTTATATGGAAGCAGTCTTCCTTTGCCTGCATTATTACCTCACAACCAACAAATT GCCCCCTTGGGCTATGATAGAAGAGGTGAACCTGAGCGAGCTCTGGAAGTATTCCCTCGTACCA GTTCGTATGGGTATAGTTCCATGCAGGTATGCTTTGTGATTTTGCATCAGTTTTCCCTTTTCCT CCTTTGGTTTTAGGCATTCCTTGATATCTATGAATTCATTCTCATCTTAATTGTTGACATCCTC GACCAGGTCACGGATGATGGCTATGGAGGACTTCCATCCTATGCATCAAAGGCATATGAAGAGT ATGTTTCAACTGAACTTGCAATAAATCTTGTTCTTATTCTACAATGTTAGTCTTCCTTTTAGTT ATTGCTCTCTATTCAGTTTGATACTTGCAATTACAATACTTTTTTTTTGCTAAATATCAATTGT CAGACATGTACCACGTTTGGAAATGACTGTACCTGCTAGTGGCATCTCAAAAGTAATGGGAAAA CATGGCACAAACTTGGACAACATTAGAAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.248355684

Conservation Information
Conserved circRNAs	NA
PMCS	0.248355684

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							60600568-60600567(+)
60600856-60602964(-)
						
						Potential amino acid sequence
						
							MRQQTGKRPSQHREYEREERKDQHKRPFPRAQESSNNDGLVLYRILCPDSLIGSVIGKHGNVIN
AIRHQTSAKVKVVDPYPGADKRVILVYCYVKHRDLDAEGDDNEPVCAAQDALLRVHNAIVDALQ
TLHKNHKDSDKKSTEEANILVPASQASNVIGKSGAVIKHLRSTSRAFIKVSPKDPSDPTHSCAM
SFDNFVQITGGAEAVKKALFGVSTIIYKHPSKENIPLETSIPDPTPSIIIPSELPVYPASNFYS
APDAAIPSVHPSMSVLGSTRHVPELAVPADDHGRLPIYQSILPVIPTYSAPKCSGELEFRVLCP
GGKIGLVIGRGGATIKNIRQESGARIDVDDAKNDKEESIITIISTESTDDVKSAAVEAVLLLQA
KINDSEDDRMNLRLLVPNKVIGCLIGRGGSIVNDMRKKTKANILISKGDKPRRASSSDELVEVS
GEADKLRDALVQIILRLREAVLKESVESQNSDRDGQLTVAASDSLYGSSLPLPALLPHNQQIAP
LGYDRRGEPERALEVFPRTSSYGYSSMQVTDDGYGGLPSYASKAYEEHVPRLEMTVPASGISKV
MGKHGTNLDNIRKLTKQ*(+)
MLDVAIYQDNPFVCTGVRVNNLDFGTCLMPDSIYHIAMLSYDTTNQTVWTEYTVKNQPIIIRAF
LSTGKRPLVLVLPFFSFIFPVLGGTLTSLLPHCLVNFLMLSKFVPCFPITFEMPLAGTVISKRG
TCSSYAFDA*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						responsive to drought stress

Functional Information
Coding potential	Y
Potential coding position	60600568-60600567(+) 60600856-60602964(-)
Potential amino acid sequence	MRQQTGKRPSQHREYEREERKDQHKRPFPRAQESSNNDGLVLYRILCPDSLIGSVIGKHGNVIN AIRHQTSAKVKVVDPYPGADKRVILVYCYVKHRDLDAEGDDNEPVCAAQDALLRVHNAIVDALQ TLHKNHKDSDKKSTEEANILVPASQASNVIGKSGAVIKHLRSTSRAFIKVSPKDPSDPTHSCAM SFDNFVQITGGAEAVKKALFGVSTIIYKHPSKENIPLETSIPDPTPSIIIPSELPVYPASNFYS APDAAIPSVHPSMSVLGSTRHVPELAVPADDHGRLPIYQSILPVIPTYSAPKCSGELEFRVLCP GGKIGLVIGRGGATIKNIRQESGARIDVDDAKNDKEESIITIISTESTDDVKSAAVEAVLLLQA KINDSEDDRMNLRLLVPNKVIGCLIGRGGSIVNDMRKKTKANILISKGDKPRRASSSDELVEVS GEADKLRDALVQIILRLREAVLKESVESQNSDRDGQLTVAASDSLYGSSLPLPALLPHNQQIAP LGYDRRGEPERALEVFPRTSSYGYSSMQVTDDGYGGLPSYASKAYEEHVPRLEMTVPASGISKV MGKHGTNLDNIRKLTKQ(+) MLDVAIYQDNPFVCTGVRVNNLDFGTCLMPDSIYHIAMLSYDTTNQTVWTEYTVKNQPIIIRAF LSTGKRPLVLVLPFFSFIFPVLGGTLTSLLPHCLVNFLMLSKFVPCFPITFEMPLAGTVISKRG TCSSYAFDA(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	responsive to drought stress

			
						 Other Information
					
						References
						Han et al., 2020; Ma et al., 2021b;Zhang et al., 2019

circRNA

Detail information of Zm00001d024270_circ_g.2

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