Detail information of AT2G26780_circ_g.9


General Information
CircRNA Name AT2G26780_circ_g.9
ID in PlantcircBase ath_circ_015040
Alias NA
Organism Arabidpsis thaliana
Position chr2: 11416091-11419249  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene AT2G26780
Parent gene annotation ARM repeat superfamily protein
Parent gene strand +
Alternative splicing AT2G26780_circ_g.10
Support reads 1
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G26780.1:8
AT2G26780.2:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGGTGCAGGAGTTGCCCTCCGTCCACATTTGTCCGACTTAGTTTGTTGTATGTTGGAAAGTTTG
TCTAGTCTTGAAGACCAAGGACTTAACTATGTTGAGgtttctaaagcagttactcaaaatgcgg
taaagtatttggtggaagttgttaatttagagactgcaccactggcttctgttgctatggaagc
tctgggtc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTTCTAAAGCAGTTACTCAAAATGCGGTAAAGTATTTGGTGGAAGTTGTTAATTTAGAGACTG
CACCACTGGCTTCTGTTGCTATGGAAGCTCTGGGTCATATTGGGATTTGTGGCGCATTACCCTT
TCTTGTTAATGATTCTAGTCCAGGTCAGTTTATTCCAAGAACTTGTCTGCAACATGTATGCGAG
TTTTCAGTTGATTGACTGACTTGCTCTATCAGGGACTCAAGTGCTGGAAATTCTTCAAGAAAGA
TTGAGCAAGCTACTCTCTGGTGATGATATAAAATCAGTTCAGAAAATTGCTCTTTCTCTTGGAC
ATATCTGTTCAAATGAAACGTCATCTTCGCACTTGAAAATAGCGCTTGATCTTTTATTTAGCCT
TTCACGGTCAAAGGTGGGTTTGTAATATTGTTCGCAAAGCCACTGCCCTCTGTCCTTTTTATTA
GATCCGGAAGAATTCAAGTAGAACTGAGTAAACCTCTAAATTTTGTACATTTGTTGGTGGCCAG
GCTGAAGAAATTTTGTTTGCTGCTGGTGAGGCGCTATCTTTCCTCTGGGGTGGTGTACCAGTTA
CTGCTGATATGATTCTGAAAACTAATTATACTTCTCTTTCGACGGACTCAAATTTTCTGATGAA
AGAAGTTAAATCTTTGTCTGATGTCAAAACTGATACTGAGGAAGATAGCCGTACCACAACCAGA
GAAACAATTACTGGAAAACTCTTTGACACTCTTCTGTATAGTAGCAGGAAGGAGGAACGATGTG
CTGGAACTGTGTGGATGCTGTCTTTGACCATGTACTGTGGCCAGCAGCCATCAATCCAACTAAT
GCTTCCAAAAATCCAGGTTAGCGAGCTGTAATGGGAAGATTCTTTGCTGTTGTAACCCGCCCCT
GCACCATCACACCTATAAGGAAAATTATGAGCATTGTCATTCCAGTTAATTTATATGCATTACC
CATTCGGAGCCTTGAACTGTTATATCAATTACTATTTTATCACAAAAGCCCCATGACTTGTGCT
ATGTTGTCAACTCTACAATGTGTAGAAGCTTGTACAAACCGCTGTTTAACTAAAATATTTTTTC
GCAGGAGGCTTTCTCACATTTGTTAGGTGACCAGAATGAACTTACACAGGAGCTGGCATCCCAG
GGCATGAGCATCATCTATGAACTTGGTGATGCATCAATGAAGAAAAGCCTGGTAGATGCTCTGG
TAAATACTCTAACAGGCACAAGCAAAAGAAAACGAGCTATTAAGGTAAAATCTATCCATCTAGG
TCCTTCCTTCAGGTACTTCAGTTTTTGTATTTGTTCCTCAAGAATTTTTGTTATCCAGCTTGTT
GAGGAGTCTGAAGTGTTTCAAGAGGGAACTATCGGTGAGAGTCCTAGTGGAGGGAAGATTAGCA
CTTACAAGGAGCTTTGTAATCTTGCAAATGAAATGGGGCAACCTGATTTAATTTACAAATTTAT
GGACTTAGCCAATCACCAAGCTTCTCTTAACTCAAAGAGAGGAGCTGCTTTTGGGTTCTCCAAG
ATAGCCAAGCAAGCTGGAGATGCTCTTCGACCACATTTGCGACTGTTGATTCCGAGGTTGATTC
GTTACCAATATGATCCTGACAAAAATGTCCAGGTACGATTTCTACGTTTTGTGCTGTTACTCTA
TATCAGCGTATTCAAGCTATATATTCATCACTGGTCTGGCGACTAAAAGTTGACTTATTTAAAC
TGAACTGAGTGACACCATTTCTAGCATTTCTAGCATTTTTTCTTTCCTGTGTATAAATCAGTAG
ATTGTTCTAGTTTAACACGAGAAATATTTAGCTGTTGCACTTCTACAAGCTGCATAAATCACTT
TAGTCATGTATTTCACCGCCAAAGTTATAGCTGTTTAAGTGATACCACTTACACCTGCCTGGCA
GTTCATCTTGTCATAAAAGGTTGCCATAGCGTTTGTTTGCTTCTTTTAGTAATTGCTACTTTTC
ATGTAATCTTGGCAGGATGCGATGGCACACATTTGGAAAGCACTGATACAAGACCCTAAGAAAG
CTGTTGATGAACATTTGAATCACATCTTCGATGATCTGCTAGTACAATGTGGTTCACGGCTTTG
GCGCTCCCGTGAGGCATCCTGTTTGGCTCTTGCTGATATTATTCAAGGTCGGAAATTTGACCAG
GTGAGATCTTCGTATTTTAACATACAAAAAAGGAAATTTCCCGTTGCTTCGGCTCTGCATACTG
CATCGGTAAATTCTAGTGCATGTATAAATCACTTTAAACTCTATATCTTGAACTCTGGTTCTGG
TTTCGGATGCTGTTGTTAATTCCTTTTGCATATCAATTTACATACCTGCCGGGTTTTTTTTTGG
ATTCTTGAACCTGCTTGTAGTGAAGTATAGGATATATATATCAACCCAGCTGCGTGGTTGTTTC
TATCTTGTATGTAAACATTGTTGGTCTATCAGATTTTCTAAGTGGTATTGTTTTTTCACGCCCT
TATGTTATTAAAAGGTCAAGGAGCATTTGAAAAAACTATGGATAGCTGCCTTCCGTGCAATGGA
TGACATTAAAGAAACTGTGAGAAATGCTGGTGATAAGTTATGTCGTGCCGTGACATCCTTAACA
ATAAGGATCTGTGATGTCACGCTTACCGAACTAGCAGATGCAAAACAAGCGATGGATATTGTTC
TTCCTTTTTTGCTTTCAGAAGGAATAATGAGTAAAGTCAACAGTGTACGTAAGGCTTCAATTGG
AGTTGTTATGAAGCTTGCAAAGGTTAGCCCTAACTTTGGTAGATTGATGAGTAATCATGCCTGT
TTCTCAGAGATTATTCTTGTGACATTGGTAGTGGTACATTTTAATTTTATTTCAATACAGTTGA
GTAATCAGTAAACCTAGATTGCAGAACTTAACCTTGTCTTGGTGTGTTCTTTCAGTTTTACTCC
AAACATGAAATAATTAATCAGTTTGAATTACTTGCTAGTTTTGGTGAACTGAATGTCCTCCTCG
GAAATATTTATGATCCTTTAAGTGATTTTGTGCTATTCGTTACCGTTTGCAGGGTGCAGGAGTT
GCCCTCCGTCCACATTTGTCCGACTTAGTTTGTTGTATGTTGGAAAGTTTGTCTAGTCTTGAAG
ACCAAGGACTTAACTATGTTGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.146522177
Functional Information
Coding potential Y
Potential coding position 11416175-11419246(+)
Potential amino acid sequence MEALGHIGICGALPFLVNDSSPGTQVLEILQERLSKLLSGDDIKSVQKIALSLGHICSNETSSS
HLKIALDLLFSLSRSKAEEILFAAGEALSFLWGGVPVTADMILKTNYTSLSTDSNFLMKEVKSL
SDVKTDTEEDSRTTTRETITGKLFDTLLYSSRKEERCAGTVWMLSLTMYCGQQPSIQLMLPKIQ
EAFSHLLGDQNELTQELASQGMSIIYELGDASMKKSLVDALVNTLTGTSKRKRAIKLVEESEVF
QEGTIGESPSGGKISTYKELCNLANEMGQPDLIYKFMDLANHQASLNSKRGAAFGFSKIAKQAG
DALRPHLRLLIPRLIRYQYDPDKNVQDAMAHIWKALIQDPKKAVDEHLNHIFDDLLVQCGSRLW
RSREASCLALADIIQGRKFDQVKEHLKKLWIAAFRAMDDIKETVRNAGDKLCRAVTSLTIRICD
VTLTELADAKQAMDIVLPFLLSEGIMSKVNSVRKASIGVVMKLAKGAGVALRPHLSDLVCCMLE
SLSSLEDQGLNYVEVSKAVTQNAVKYLVEVVNLETAPLASVAMEALGHIGICGALPFLVNDSSP
GTQVLEILQERLSKLLSGDDIKSVQKIALSLGHICSNETSSSHLKIALDLLFSLSRSKAEEILF
AAGEALSFLWGGVPVTADMILKTNYTSLSTDSNFLMKEVKSLSDVKTDTEEDSRTTTRETITGK
LFDTLLYSSRKEERCAGTVWMLSLTMYCGQQPSIQLMLPKIQEAFSHLLGDQNELTQELASQGM
SIIYELGDASMKKSLVDALVNTLTGTSKRKRAIKLVEESEVFQEGTIGESPSGGKISTYKELCN
LANEMGQPDLIYKFMDLANHQASLNSKRGAAFGFSKIAKQAGDALRPHLRLLIPRLIRYQYDPD
KNVQDAMAHIWKALIQDPKKAVDEHLNHIFDDLLVQCGSRLWRSREASCLALADIIQGRKFDQV
KEHLKKLWIAAFRAMDDIKETVRNAGDKLCRAVTSLTIRICDVTLTELADAKQAMDIVLPFLLS
EGIMSKVNSVRKASIGVVMKLAKGAGVALRPHLSDLVCCMLESLSSLEDQGLNYVEVSKAVTQN
AVKYLVEVVNLETAPLASVAMEALGHIGICGALPFLVNDSSPGTQVLEILQERLSKLLSGDDIK
SVQKIALSLGHICSNETSSSHLKIALDLLFSLSRSKAEEILFAAGEALSFLWGGVPVTADMILK
TNYTSLSTDSNFLMKEVKSLSDVKTDTEEDSRTTTRETITGKLFDTLLYSSRKEERCAGTVWML
SLTMYCGQQPSIQLMLPKIQEAFSHLLGDQNELTQELASQGMSIIYELGDASMKKSLVDALVNT
LTGTSKRKRAIKLVEESEVFQEGTIGESPSGGKISTYKELCNLANEMGQPDLIYKFMDLANHQA
SLNSKRGAAFGFSKIAKQAGDALRPHLRLLIPRLIRYQYDPDKNVQDAMAHIWKALIQDPKKAV
DEHLNHIFDDLLVQCGSRLWRSREASCLALADIIQGRKFDQVKEHLKKLWIAAFRAMDDIKETV
RNAGDKLCRAVTSLTIRICDVTLTELADAKQAMDIVLPFLLSEGIMSKVNSVRKASIGVVMKLA
KGAGVALRPHLSDLVCCMLESLSSLEDQGLNYVEVSKAVTQNAVKYLVEVVNLETAPLASVAME
ALGHIGICGALPFLVNDSSPGTQVLEILQERLSKLLSGDDIKSVQKIALSLGHICSNETSSSHL
KIALDLLFSLSRSKAEEILFAAGEALSFLWGGVPVTADMILKTNYTSLSTDSNFLMKEVKSLSD
VKTDTEEDSRTTTRETITGKLFDTLLYSSRKEERCAGTVWMLSLTMYCGQQPSIQLMLPKIQEA
FSHLLGDQNELTQELASQGMSIIYELGDASMKKSLVDALVNTLTGTSKRKRAIKLVEESEVFQE
GTIGESPSGGKISTYKELCNLANEMGQPDLIYKFMDLANHQASLNSKRGAAFGFSKIAKQAGDA
LRPHLRLLIPRLIRYQYDPDKNVQDAMAHIWKALIQDPKKAVDEHLNHIFDDLLVQCGSRLWRS
REASCLALADIIQGRKFDQVKEHLKKLWIAAFRAMDDIKETVRNAGDKLCRAVTSLTIRICDVT
LTELADAKQAMDIVLPFLLSEGIMSKVNSVRKASIGVVMKLAKGAGVALRPHLSDLVCCMLESL
SSLEDQGLNYVE(+)
Sponge-miRNAs ath-miR395d
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017