Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT2G26780_circ_g.9 |
ID in PlantcircBase | ath_circ_015040 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr2: 11416091-11419249 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, PcircRNA_finder |
Parent gene | AT2G26780 |
Parent gene annotation |
ARM repeat superfamily protein |
Parent gene strand | + |
Alternative splicing | AT2G26780_circ_g.10 |
Support reads | 1 |
Tissues | whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT2G26780.1:8 AT2G26780.2:8 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.146522177 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
11416175-11419246(+) |
Potential amino acid sequence |
MEALGHIGICGALPFLVNDSSPGTQVLEILQERLSKLLSGDDIKSVQKIALSLGHICSNETSSS HLKIALDLLFSLSRSKAEEILFAAGEALSFLWGGVPVTADMILKTNYTSLSTDSNFLMKEVKSL SDVKTDTEEDSRTTTRETITGKLFDTLLYSSRKEERCAGTVWMLSLTMYCGQQPSIQLMLPKIQ EAFSHLLGDQNELTQELASQGMSIIYELGDASMKKSLVDALVNTLTGTSKRKRAIKLVEESEVF QEGTIGESPSGGKISTYKELCNLANEMGQPDLIYKFMDLANHQASLNSKRGAAFGFSKIAKQAG DALRPHLRLLIPRLIRYQYDPDKNVQDAMAHIWKALIQDPKKAVDEHLNHIFDDLLVQCGSRLW RSREASCLALADIIQGRKFDQVKEHLKKLWIAAFRAMDDIKETVRNAGDKLCRAVTSLTIRICD VTLTELADAKQAMDIVLPFLLSEGIMSKVNSVRKASIGVVMKLAKGAGVALRPHLSDLVCCMLE SLSSLEDQGLNYVEVSKAVTQNAVKYLVEVVNLETAPLASVAMEALGHIGICGALPFLVNDSSP GTQVLEILQERLSKLLSGDDIKSVQKIALSLGHICSNETSSSHLKIALDLLFSLSRSKAEEILF AAGEALSFLWGGVPVTADMILKTNYTSLSTDSNFLMKEVKSLSDVKTDTEEDSRTTTRETITGK LFDTLLYSSRKEERCAGTVWMLSLTMYCGQQPSIQLMLPKIQEAFSHLLGDQNELTQELASQGM SIIYELGDASMKKSLVDALVNTLTGTSKRKRAIKLVEESEVFQEGTIGESPSGGKISTYKELCN LANEMGQPDLIYKFMDLANHQASLNSKRGAAFGFSKIAKQAGDALRPHLRLLIPRLIRYQYDPD KNVQDAMAHIWKALIQDPKKAVDEHLNHIFDDLLVQCGSRLWRSREASCLALADIIQGRKFDQV KEHLKKLWIAAFRAMDDIKETVRNAGDKLCRAVTSLTIRICDVTLTELADAKQAMDIVLPFLLS EGIMSKVNSVRKASIGVVMKLAKGAGVALRPHLSDLVCCMLESLSSLEDQGLNYVEVSKAVTQN AVKYLVEVVNLETAPLASVAMEALGHIGICGALPFLVNDSSPGTQVLEILQERLSKLLSGDDIK SVQKIALSLGHICSNETSSSHLKIALDLLFSLSRSKAEEILFAAGEALSFLWGGVPVTADMILK TNYTSLSTDSNFLMKEVKSLSDVKTDTEEDSRTTTRETITGKLFDTLLYSSRKEERCAGTVWML SLTMYCGQQPSIQLMLPKIQEAFSHLLGDQNELTQELASQGMSIIYELGDASMKKSLVDALVNT LTGTSKRKRAIKLVEESEVFQEGTIGESPSGGKISTYKELCNLANEMGQPDLIYKFMDLANHQA SLNSKRGAAFGFSKIAKQAGDALRPHLRLLIPRLIRYQYDPDKNVQDAMAHIWKALIQDPKKAV DEHLNHIFDDLLVQCGSRLWRSREASCLALADIIQGRKFDQVKEHLKKLWIAAFRAMDDIKETV RNAGDKLCRAVTSLTIRICDVTLTELADAKQAMDIVLPFLLSEGIMSKVNSVRKASIGVVMKLA KGAGVALRPHLSDLVCCMLESLSSLEDQGLNYVEVSKAVTQNAVKYLVEVVNLETAPLASVAME ALGHIGICGALPFLVNDSSPGTQVLEILQERLSKLLSGDDIKSVQKIALSLGHICSNETSSSHL KIALDLLFSLSRSKAEEILFAAGEALSFLWGGVPVTADMILKTNYTSLSTDSNFLMKEVKSLSD VKTDTEEDSRTTTRETITGKLFDTLLYSSRKEERCAGTVWMLSLTMYCGQQPSIQLMLPKIQEA FSHLLGDQNELTQELASQGMSIIYELGDASMKKSLVDALVNTLTGTSKRKRAIKLVEESEVFQE GTIGESPSGGKISTYKELCNLANEMGQPDLIYKFMDLANHQASLNSKRGAAFGFSKIAKQAGDA LRPHLRLLIPRLIRYQYDPDKNVQDAMAHIWKALIQDPKKAVDEHLNHIFDDLLVQCGSRLWRS REASCLALADIIQGRKFDQVKEHLKKLWIAAFRAMDDIKETVRNAGDKLCRAVTSLTIRICDVT LTELADAKQAMDIVLPFLLSEGIMSKVNSVRKASIGVVMKLAKGAGVALRPHLSDLVCCMLESL SSLEDQGLNYVE(+) |
Sponge-miRNAs | ath-miR395d |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |