Detail information of AT1G56070_circ_g.4


General Information
CircRNA Name AT1G56070_circ_g.4
ID in PlantcircBase ath_circ_007657
Alias NA
Organism Arabidpsis thaliana
Position chr1: 20968713-20969195  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method SMALT, Segemehl
Parent gene AT1G56070
Parent gene annotation Elongation factor 2
Parent gene strand -
Alternative splicing AT1G56070_circ_g.5 AT1G56070_circ_g.6 AT1G56070_circ_g.7 AT1G56070_circ_g.8 AT1G56070_circ_g.9 AT1G56070_circ_g.10 AT1G56070_circ_g.11 AT1G56070_circ_g.12 AT1G56070_circ_g.13 AT1G56070_circ_g.14 AT1G56070_circ_g.15
Support reads 2
Tissues siliques and seeds
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered AT1G56070.3:1
AT1G56070.2:1
AT1G56070.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGGGTCTGACTTGATAATTTCAGCACCACCCATGAAATCATCCTGAAGATCCTTAAGACAAAT
CTCAAGATGGAGTTCTCCTGCACCAGCAACAATGTGctcaaaacagatacctctcatgttctct
tcagcaagaggaccttccttggacgcccactggaaaccagcaacaactgaatccttgatttcgt
taaggtac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCAAAACAGATACCTCTCATGTTCTCTTCAGCAAGAGGACCTTCCTTGGACGCCCACTGGAAA
CCAGCAACAACTGAATCCTTGATTTCGTTAAGGTACTGAACTCCCTTACACATATCGACAACCA
TGTTAGGCCCTGTGGTTTCAGGTCCAAAAGCCCAGATCTTCTTTGCAAGATCCTTGTCCCATCC
AAACTCCTCAGCCAAGATCTTGGATCTGATCTTAGGGTCATCCCTTGGGCCAATACGTCCATCA
TCAATAGCCTCAGCTAGACCTTCCTCCATGGGTCTTGCTTCCATGTACAGACGGTTATGCTTGT
TAGGAGACTTACTCATAACTGTGCGAGTAGATCTATCACAAACTGTCTCACGGAAGGAGACCAC
AGGGTCTGACTTGATAATTTCAGCACCACCCATGAAATCATCCTGAAGATCCTTAAGACAAATC
TCAAGATGGAGTTCTCCTGCACCAGCAACAATGTG
Conservation Information
Conserved circRNAs NA
PMCS 0.845797613
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015