Detail information of EPlOSAG00000023089_circ_ig.2


General Information
CircRNA Name EPlOSAG00000023089_circ_ig.2
ID in PlantcircBase osa_circ_027241
Alias Os_ciR5458
Organism Oryza sativa
Position chr5: 11993266-11997755  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method CIRI, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing EPlOSAG00000023089_circ_ig.1
Support reads 3/2
Tissues root/shoot
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGATGGTGGTTGTTACCGTTGCCATGCCGATTTCCGCCGTGGGGATATCCTCTGCATCATCGTC
ACTATCCAGGCCTACCCGTACCTCGTCCGAGATTTGataattgcttaatcggtgaagaagtgaa
ttaggtgctgacattttccaaattcaaggcaagtcccacctccctctctttgatcacattgaac
ctatgttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATAATTGCTTAATCGGTGAAGAAGTGAATTAGGTGCTGACATTTTCCAAATTCAAGGCAAGTCC
CACCTCCCTCTCTTTGATCACATTGAACCTATGTTTTGGAGATTATTGAAAATGTTTGCAAATC
TTGCATGTCGATTGTACACTAATAAATTAAAATTTTGTTAAACTTGATAGACAAACTCGTACTA
CTTGCATTATCATCTTAACTGCACATATATCCATATCCCTCATTCCTAACCTTAGGAACAATAT
GACTATACCACTTTATATATGAGTTTTGGTGACACTAGGTTACTATAATGCTTAGCCATGCTTA
GAATGGTCTTCCTTGTCATTATGGGCTCATTACAAATATGAAAATTGATTTTTAAATAATCTTG
ACAGAACTTTAATACTTGTGATTTTGATAAATAAAATGGTGGAAAACATGGATTTTAGGTTTAG
GCCTTAAGTGGTGCACATATAGTGATTAGTTGTGTACCGATAGGGAGAGAGTGTGCCCAAACCG
ACCTAAGGACTTCACTCAATGTCAGTTCATTTCGTATACAATACAACCACATATGCTAGTATGG
GATAGCCCAAGCTTAGTAAATTATTTATGTTTTAGCCTTACATTCTGGTAGGTCGGTGTGTATG
AGTTCGTATAATTCAGAGGAGCTTCCTATTTACCCTGAAGTAGTAGTTTAGGTGACTAAGCGTG
TCCAATACAATGGTATTGTGCCACGTGGTGGGTTCCCATTGTGTCCGCCACCACGGCGTTAAGT
TTAAGGCGTGGGCCCGCCACTTAACAGTTCTAGGTCATATTTCCAGTATGACTAGGATGGAGGA
ACACGTATCGTGCTGGTGTAAGGCTAAATCATGAATTTTGGAAAAGCTTTGTTGTAGGTAATAA
ATCAGGTACTTATGTATCACATGCCATGCTCTTGAATGATTATTATTTCGCATTATGTGGGTAA
AGTGTACAAACTCTGCAGAGTAAAAACTAATCGATTAGCTGTGCTCGCGGTCATGAGCGGCGTG
TGGATATGTATTGAGTATAGACTTACCTTCAAATTGTGATGAGATTTGAGAATCATCTCCTTGC
TGCCATGGATGGCAATGAGGTGCATATTTACACATGATTAATGTCTACTTTGATGCTCATATGC
TAAAATACTAGCTTGCTGAAATTTATTTGAAAGCAAATCTTATTTGAAAGTGTTTTATGCAAAT
AAAACTTGCTTTATGCTAAAAAGAACCATATTATGCCTTCCTTGATTATATGCCTTGCAAGTAG
GGTGTTAGGTTTGTCTTGGTGCTTGCCAGTACATTATTTCTAATAATGTGCTGACTCTTTCTGT
CGGAGATATGGGCCCGGGGGTATATGAAGTGAGGGGAAGTTACCTTCCCATCCAGCCGTGTGGC
TCTACAGCCTAACCCTACTCCCGCACCTCGCGAGTCACAGAAGCAGCCGGGGGGCCTCGGGATG
CCACGTCGTGCCCCTCTGGCTCGCCCGCTACCTCGCCCCGAGGCCCTCACCCAGCTGCCATGTG
GCGGGGGGAGCGAGCGAGAAGGGGACCCAAGCTGAACAGCCATCAATGCGCGGCGCCCCAACTG
TCCCTCACCGCGTTTAATGCGGTAAGGGTAGACGTGCGATGCCGCCTAGCTGACCCACGTCAAT
CGGACAATCGGACGTGACCAGTCTATGACCGGCCTGTTGCTGGTCACGTCCGATTGAACGGGCG
GCCATGCCCCCACGTCGCCTCTATATCCGACGGAGTGGAGGTAGGTATGACCCGTCCCATCGGA
GCGTCATTCGGAGGAGGACCACCACAATTCTTCACTCATTTATGAGGGAATGACAGGGCTGTCC
CCCGTGTCAGGCGGGGGGCAGTGCTGGGTCCCACTCAAGGACTGGCTGTTGCTTAGCTTTCGGG
CGAAGGCACGGATCGTGGCCCGGTCATGGTAAAGTGGGTCCAAATCCCATGGAAGGGTAGGTAG
AGGCAGTGCATGTGGTATCCCCTTGAACTATAAAAGGAGGACATTGCCCATCGAGAAGGGGGAC
GACTCTTAGAAAACCTGAACTCTAGGAGAAGAAGGGCGAGAGAGCTCTCCGGAGTGAAGGAATC
CTTGTAACACTTAACCATAATCTCAAACACAGGAGTAGGGTATTACGCTCCACAGCGGCCCGAA
CCTGTATAATCCGATTGTGTGCAAGCTAGTTAGCAGCCTTAGGGGTGGATACGTGATTTCTAAG
AGGCGAGCTTCTTCCCCCGGCCGAACCCACGAAAGGGGGGTCTTACGACCTCCCGCTATCAAGG
GACTTCCCTCGACAGCTGGCGCACCAGGTAGGGGGCAGTCGCGCGCTTTGAAGAGAAGTTGTTT
TCTTCTGCCCCAAGTTTCCCTGGGCCCTTGACGATCATGGTCGAGGTCCTGGAGGTGGAGGAGG
CGGTGGCGTTTACCCCCACCCCGTCCGGGAGTGCACGGGGTGGGGATTCTAGTGGGAGCCGCGG
CCCTCGTCACCGTCGCCGTGACTCCCCAACTCCTCCCAGATGCGAACCCTCGCGGAGGGAGGAT
CCCACCCTTTCGGGTGGTTCGGCCCTCTCTCCACCCCGGGCGGAGGGAGGCCACGACGCGTTGG
GGCACGACGCCGCCTCACTTACGGCGATGGCGGTTCGCCCCGAGGCGCGCTTCAGGCAGCGGGT
GCCTTTCTGCGGCATCCCCCCGTGAACTCGGAGCCGGAGACCCCTGTTCAGCGCTGGCTGGACG
ACGTGGCCAACTTGGTCACCACTGCCCAGCGGCAGTTGGCCGCGGGCGGCCGACCCGCCACCAC
CAGTACGTCGCGTACCCCCGTTACCCTCTCCTCGTCGGCAAGGAGGAGGGCCCGTCGGTTGGCC
ACTGCCTCAAGGCGATCCACGGCTCCAGCATCGTCGGTGGCCTCGGGAAGCCGGAGGCGTCATG
ACGGTCTCTACGGGGAGCAGGACGCTCGGATCAACATCGACCGACGCAGGGACGAGCGCCGAGC
TGCCCGCATGGGGGAAGGCACCTCCTCATCTGGAGTGCCACGTTCCTCCTTGAAGGTGCACTTA
AACCCCCTAGTGGGTTTTGGTGATTAATGACAAGGTGGTTAAAGGGGACTAACGTGTTTATCAA
GTTTATTCACAGGAGTTTAGTCCCAAAGCAAGTTGTGATGGCTAAGAATGCAAGGAGACCCCCC
CAATTTGAATGTTCCTAAGTGCGAAAAACACCGAAGGTTATTAGACTAGGTTTTTCTCTTTCGA
AATTGAGTTTAGGAAAAACCATACTATTAAGAGGGGTTTCAAGTGTGGTTCTAGGGTATACAAA
GTGCTCTTAGTCATATCCATGAGTCAAAATATTTTTGGAATCTTTTTGAAAAATGATTTTTCTC
CCCGGGACAGAGAGGGCTACCCGGAGGTTCTGGCCGGAACTTCCGGGCGCCATTTCAAAAGCAA
AAATTTCCTAAGTGCTGCCCGAAACCTCCTGGCAGGTTTCCAGTTCAAACTTGTGAGTAACGGC
TAGATGACATCACCTAGCCGTTATATATATATGGATTTCGTCCCCAGGTCACCCTTTGGCCATT
CCACTTCAGTTCTTTCATGTTCTAGGGTTTTCTAGCCACTCCCAAGCTTCCTTTGCTTCCTCCA
CTCAAATCTAGAGCCTATCTTGTGAGATTAAGAGATTAGATGAGAGTGTAGGAGTGCTTTGGAG
ATGGCTTGAAGATTAGGTTTGATTGAGCACTTTGGATACCTTGTGGGCTGTCACTTGGGCTTAT
TACTCTTGGAGATCTTCTCCTAGACGGTTAGGCAGCGCCGATCCGAGGCTTCACCTCCACCCAG
CTGCATCGCCTCCTCCCCATTACCACTCCTGAGCCAAGCAAACCGAGGGGGAGAGCTCCGGCTT
TTCTTTTTCATCTCGACCTTGCCGCCGGCCGTGAAGACGACGGCCGTCGCCATCGCCATTGTAC
CGTGGTCGTCTCCTCTCTTCTACCGTTCCATACTCTCCTCCTCATGCAGATCATCTTCTATTTT
GACACCACGTCATTTCATCCAGTGCAGCCACGAGAACGCAGAGCTCGCCGACGATGCTCTGGAG
CGCGCACTGGACGCCGTCGTCGGGTTCTCGTCGTCGTTTTGACCGAACCGAACCACCCCAAGCC
GAACTCTTGCGCCACCAGGATAGCCTCGACGTCCTCTTCGAAAGCCCTCAAGAACTCCAGCCAG
TGCCGCAACAACGAGGGAGATCGGCGTCTTCTTCCTCAAGTCCGGCCGCCGACCACCGTCGTTG
ATTCCTTGATCCCGGGTGAGCTTCGGCGCAATTCCTCACTCGTGTAGCATCTTTAGATGATCGT
TGAGCCGTTCCACTCTTTTTCATGACAGCTCGAAGTCCGGATGGTGGTTGTTACCGTTGCCATG
CCGATTTCCGCCGTGGGGATATCCTCTGCATCATCGTCACTATCCAGGCCTACCCGTACCTCGT
CCGAGATTTG
Conservation Information
Conserved circRNAs NA
PMCS 0.675456139
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017