Detail information of AT2G11000_circ_g.1


General Information
CircRNA Name AT2G11000_circ_g.1
ID in PlantcircBase ath_circ_013151
Alias At_ciR2202
Organism Arabidpsis thaliana
Position chr2: 4341388-4343471  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ
Parent gene AT2G11000
Parent gene annotation MAK10 homologue
Parent gene strand -
Alternative splicing AT2G11000_circ_g.2
Support reads 4
Tissues leaf
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered AT2G11000.1:7
AT2G11000.4:7
AT2G11000.3:7
AT2G11000.2:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTGCACATGGAATACGCTCCAGTCATTTAAGATTTTCCCAAGCTTACGCCTCTGCCATGGGGT
ATTAGCGCATAGTATTTTAAGTAGATTAACCATCAActtaagcgaacggtcttgacagaaaagg
ttcacagcaacaatattgcgttccgcgactttctctaatcccgtgacttcagccagcttatcag
gatcgttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTAAGCGAACGGTCTTGACAGAAAAGGTTCACAGCAACAATATTGCGTTCCGCGACTTTCTCT
AATCCCGTGACTTCAGCCAGCTTATCAGGATCGTTGGCGTAACCGACCTTTATGTCCTTAGCGA
TCTTTTGAGCATCGTGAAAGTACTCATACATAGGAAGATACTGCAGCAAAAGTAAATAGATACA
ACTTTACTTGCATGTTCAAAACTCTTTCTAATCGAACATAGTAGATTTATACGTGTACACATTC
ATCACTAAAACATTGTAAACATTACCTATGTTATTATTTGCTCAATGAAGATTGGGATCTCAAT
TTTCATGTGTTTATATTTATTAATCAAGTTATTGCTTTTAAGCAAATAGTTAACTAATAAATCC
TACATAGATATATTTTAAATAAACTGTGAATCCTAAATTTTTCCGTATTTTCCGAATTACCTGA
ACCGAACTCAAGATTTTGCGATTTATGGTATTAAAGCAGATAGTGATTGTAGGTACCCGGACTA
CCTTTACAGTACTCGATTCCCTATCACCCAACCAATTTTTTTAAGTGTATGCTTCGGGTAGTAG
ATTTAGATATACCTGAAATAACCATATCCAACCCTTACCAGCTATTACCTGACTCTATACCCTA
AATGCACATGCCTACTTCTACAATTCATTTGACCAAGTAAACAGGATTAAGCACAAAAACAAAG
TTGAATAAAGCACACTTACGTCGAGACGAGCATGGGATGTGGATTTTGAGAACGATTCATATGC
GTCATATTCTGGAAGGGATGCCTTCTGAAGGAGTTCAAAATGCTGTATAAATTTCTGCATGTCA
AGGAAAATGGGTAGTTGAAGTCATACACAGGAAGGGATAAAACCACTCACCCATTACTAAGGCT
GAGGATTTTTATCTTACACATTAATTCAATAACTATGCAACAGATAAAGAGACTTATGCTTACC
TCATTTTCGGTATTAAAAGGTCCTTGACTCTTTAAAGACATTCCTTCATTTCTCAAAGCTGCAA
TCATCTACGGGTAAATACACAAGGTTTGGTCAGGTTTAGAGTACTTGATATCAGCAATAGAAGG
AGCTGGAAACCAAGAGATTGAAGACAAAATTACCACTGTGAGGCCTTGTGCAAGACAGGTCTGA
CATTTGAGAAACAATACCCATAGACTAATCCGATCTTCCCGAGCCATGTCCCTAGAATACTCCT
TATTCCTCTTTGCTTTTCTTTCCTCTGATCCAGATGAAGGTAAATGCATTATAAAAAGCTACAA
ATACACACTATGCAGTTATGCCAAACCAATTACTGTACAGATGGTTCATCTCCGAAACACTAGG
ACACAAAATAAAAACAAATGGATATATGAATGCTTACCAGTGTTCACAACGATTAAGACCCTGA
AACGTGCTCTTTCGGCAAGCTTCCAGAGTATAATATACATGTACCAGTATACCATGCAATATTC
ACTTGGCGAGTAGAGGTCTAGGTCAAATCCCAGCATGAGAAAGCGAATTGCCACCCAATTAATT
TGCTCTTCTAATCCACCATATATATGGTTTAAAATGAGTAGAGACTTATCCTGAAAGGTACATA
AATGCAAGTTAACACAAAATTCAATATCTGCTTATCAATAGAGCCAAAATTTTCCGAAAGAGAA
AACAGAAGTTGTAGGAATTTTGACTACTGGTTTGTTCATGCTAACAATGAATAGACAGCCGTCA
ACTAGATTCAGATAGAGGTTTGATTAAATGGACCCATAGTGATGGTAGTAAACCTACCCCATTT
TTCGAACTGCGTGATGTATCTTGCTGCATCATTTGACCAACAGCAATCCCCATCTGCCAAATAC
AGGAAAATGTATGAATGAGATCTTGACACAAAAACCCAAATCAATATGCAAACAATTTTAGGGT
AAGCGAGCTTACATATAGTTAAGTAAAGAATAATACAGTTCCAACAAAGGCACAAATGGTATAA
CCTGCACATGGAATACGCTCCAGTCATTTAAGATTTTCCCAAGCTTACGCCTCTGCCATGGGGT
ATTAGCGCATAGTATTTTAAGTAGATTAACCATCAA
Conservation Information
Conserved circRNAs NA
PMCS 0.105098924
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015