Detail information of Os11g0514400_circ_ag.1


General Information
CircRNA Name Os11g0514400_circ_ag.1
ID in PlantcircBase osa_circ_009420
Alias Os_ciR2021
Organism Oryza sativa
Position chr11: 18428115-18432319  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads 44
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACATGGAACCAGGTGCAGGGATTTACAAGGGTTGGATCCCAACTCTGCAGCACATTGAAGGGGT
CCTTCCATGCCAGCCTTTGCGCGTACAGAATGTCACcttcagtgttgcagctcacaagtgtagc
aaaagcaagaagggcagtgaacagagctgccgctgcagaatgagcccccattgctgcaagacct
gagtagtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCAGTGTTGCAGCTCACAAGTGTAGCAAAAGCAAGAAGGGCAGTGAACAGAGCTGCCGCTGC
AGAATGAGCCCCCATTGCTGCAAGACCTGAGTAGTTCTTGGCACAATGAAATGGTACAGAGGCA
AAGGCTCTTATATATATAGTACAATTGCAACGCAAAACCTGGAATTCTTTTCCACCAGAGACTT
TGAAGTTTCTAGGTTTGGTGAAGTTTCTCTGAATTGAGATATTTTACTGTTCTTCTCAAGGTAT
AATTATACCTTATATTTACTCTCTGAATTGAGATATTTTACTGTTCTTATAGCCACATGAGTCC
TGGAGCAGATCTATTATTCTGACCAAGTAAAACATCCTTAGCTGCAGAACCTGCCATTCAACAA
ACTGGTAGAAAACTACACAAAACACACGTGAAGATGGATTATTCTGTACTCCTGCGACCTCTCC
TCTGTCAGTGTACAAGATCAGAATGTACAAAGTACTAGTCAGCATGTGTATTTTGTGTTTTCTA
CCAGTTTGTTTGTCCATATATTGGAATCGGAAAATTTGAACGGAGCTCTTCTAACTATAGTTTT
GTACTCCCTCCGTTCTTAAATAATTGGCAGTGTCACTCTTCAAGTTTAAACTTTGATTGTTTGT
CTTTTTTTTACAGAAAAATATAAATACTTGAAAACATATTATATTATCGAAGTATTGTAGTGTC
ATAAATATAATAATACAATTTTCATCATCATAATATAATCATTAAAATGTACAAAATTGCGGTC
AAAGTAAGAAAGTCATAGTGTCAACAATGACAGTTATTTGAGAACGAAGGAATATGAGGTATAA
TTATCTTACTGCAAAAAGAGAGAGTAAGGTATAGCTATTGAATGAATCGAGAGCCTTGTAAATT
TATGACTTAAATGTGACAGGATGGCTGAAGTACAGTATAATTTGAAACCTCCATCATTTGGTCT
TCAACTTATCAGCCATAGCTAAATTTGAATTTTAAAACTTAATCTTAGAGTTGATTTTGATGTT
TTTTCATCATAGTTTATTTTCCAGCATTGGTTTTTAAGTCGCTAAGAACACATATATGAAATTT
TTACCCACAAATTATTTGTTATCACTAATAAGTATTGTGGCTTATAATCAGTTGTTAGACTTAG
CTTCCTTCATTTCAGTTGTTCAGTTACCATGTAGCGATTTCATCGATCCAGACATTATTAAGGT
CAATTGTGAATGTAACGAACTCCCTTAGTTTCCTAAAAAAACTCCCTAAGTGGAGGAGAATAAA
TAGAAGGAAGAAAACAGAAAAGCTGCAATCAAACGAACAAGTTCTCTGCTATGCTCTGGAAACT
CTGTTCTTCAGTATACTGTAGCAGATCCGAAATCTGTTCTTCAGTCTACTATAGCTGATCCGAA
AAAGTTCAGAATTTGTGTTTGTGTTACTACCAATTCAGTGGGTGAGGGTGAGCGAGTGATTTCT
CTCGACATAAGACATATCTCCAACACAAGTTGTTGAAGTAAATGTAATAGGTCTGTATAATCCA
GTATCCACGTAAGAGCTCTCTTTTCTAACGCAATCGTTTGCAACATCAATCAATTCAGGTAGTT
AGTTATAACTTAATCACCTATATTGACCATTGTGATACCTAGGATTAATACCTCTCCTATCCTA
AATGGCGTGTGTCAGTTTCTTTTGAGTGTATTTTAGGGAAATACAATTGTGAGTGCATGCATAG
TGGTGTGTGTCTGCATGTTCCATGCTATCATAAAATAAAAATAATCCCAGTGATTTATTCAATT
TTTGGATATGATTCCGCTGTTAAACAATCTTATGAGTGTGTCCACAAAGATATACGCGTTATAT
ACACTAAATTATAAGTTTTCAGATTTTTTTTTCGTAACAGTTTATATATAATAGTGTGAACAGT
GTATAACTGTGGATGAAATAAAAATTAGTATATAATATCATGCACCAACAAACAATAAACCAAA
GAAATAACTAATTTTCTATGTTAGATAAGAAAAACTAGTGAATTTCCAATTGAAGAATCCAACA
ACCAAATTAATCTCTCTACTATCACAATTCAAAACCGAAATCGTGCTCTGTCGATCCTAACTCC
TTGCTTCGGAATGCAATTAACTCTATGTTTCTCAATGTATTAATGGAGTTTCTATAACTTTTTA
GGTTGCATTTTAGGAGTGCAATAATGTAAGAGGACATCCTTGTACAGATTAGTGTCCATTTGTA
TAACCAAATCCCCAAGTATTCTCTCTCCGGCCCAAGCCTTCCCCATTAATAGAGCTGGGTTCAG
GCCAGAAAATCACTTCCACTGTTGTCTCCATAGCACATGGTGAATGATGCCAAGCTCATCTTTA
TTTTCAGAAATATATACACACATCTCATCTCCATAAATGGGAGTTGCCACAAAGGGGCAGAACA
AATTTTATTCAAATAAAAAATACACTACTATATGTCTAGAATGAAGCATCAAATAATTGTTTCC
CAACTCCCATCTCCCAAGGTGTGTGGTAAAACAAATCCTGACTCCTGATATTTGCCTCAGCCTG
AGGTCTTCAGATTGTCCTGAATGATGGTAGTCACTGCAAAATGATACCAATTTCTCAATTAAAC
TTGTAATTAACCGTAAACATCACATCTATGCTTGCATCAAAGCTGCAGATTTACATACCTCTCC
ACCCAGTTGATCCGACAGTGCCGTCCAAATTGTTTCCAGCAACATTTCTGCAGGTACATATTCT
TTTTGCGTCAGTGTAAATAATTGTAAAAAAGAGCACTATACATAATATCTGATTAATTTAGTTT
AATTGATTAAAGAAACAGTATTACGCACAGCTCAGTCAAGTTGCCGACAAGGACAAGGGAGAGG
ACTTCCATTGGCACTGTGCCGGTAAGTGAATTTTTGTTCAGTCGCCTGTAAAAACGAAACAGAA
CTAGTGTCATTTCATAATGCACCCACCAATCCTTTTTTTTATAATCAACATGTTCGCACATATG
CTGCAAACTTTACCAAAAAGAAAGCAATTCAATGATTATACATTTCACAATTATATGATTCCTA
GAAATTTTTTATGGCCCAAGCTTCCAATTATCAAATCACTGGGACTCTGGGAGGTATTTGCAGA
AACTTGTGGCTTTGCTTGTCCAAATGTTGTAGTTATATCTAGTAAATTAGAGAAAACTTAGAAT
TTGCACTTTCGAGTTATCTTTCGGCAAATTTAGGAAAATTCACGTACAACAACTCCAATGTCTT
GATGTTGCCGAGAGAAGCAGGGATGGTGCCACTCAATGAATTCTTCTGAAGCTCCAATTTGACA
AGGCTCGTCAGGCTGCCCAAAGATTGTGGTATGGTGCCAGTCAGGTTGTTCCCATACAACCTCC
TGCAGAACACAAAATTTTCAAATCCAAACAACAGACAAATTTCACCATAATCTTTGGAAAAACT
TGTATCTGGCAACATCTGGACATAAACTACATACAGATTTCGCAGGGTGCTAATGGCGCCTAGC
GAATCCGGTATCGCGCCAGTGAGCAGGTTGCCCTGGAGATCAAGGCTGACAAGACTGCTCAGGT
TGCCCAGTGCTGCTGGTATTGATCCATTCAGCTCATTCCCATACAGTTCACTGCAGAAATCCAA
ATCCATTTTCAGTGACATGGCTTGTGAGCTGTACAGAAAGTTTAGTTCAAGTTCTTACAGGTAC
TGAAGGTAACTCAGTCCTCCCAGCTGTGGAATCAGAGGACCTGATAGACCTGCTAACCCCAAAT
CCCTGCACAAGAAACAAATATTCAGTACTGTAAATTCAAGAAATCTAATTCATATGGTAAGTTG
GTAAGATCCGGTTTTCAATAGTTGGCACTATAAGTTTTGAATCTAGAAGGGATGAAAAAGAAAA
TCAGAATTTTAATTTTCATTCATGTGAAGTACTACTATCATAGGAACTACTAAAGCTTAGAAGA
AAACTATCGTATACTCCGCATGGTTTGAAGCTTAGACCTATCAAGAATTTTGATCTTGAGAACA
AGGAGAACAAGGAAGAACAAGGAAAGAGCAAGTGGCATACACGCGGACGACGGAGTTGTTATTG
TTGCAGGTGACATGGAACCAGGTGCAGGGATTTACAAGGGTTGGATCCCAACTCTGCAGCACAT
TGAAGGGGTCCTTCCATGCCAGCCTTTGCGCGTACAGAATGTCAC
Conservation Information
Conserved circRNAs osi_circ_009043
PMCS 0.43311214
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015