Detail information of Os05g0436400_circ_g.4


General Information
CircRNA Name Os05g0436400_circ_g.4
ID in PlantcircBase osa_circ_042116
Alias NA
Organism Oryza sativa
Position chr5: 21373299-21373585  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRI-long
Parent gene Os05g0436400
Parent gene annotation Similar to signal peptide peptidase family protein. (Os05t043640
0-01);Hypothetical gene. (Os05t0436400-02);Similar to signal pep
tide peptidase family protein. (Os05t0436400-03)
Parent gene strand +
Alternative splicing Os05g0436400_circ_g.5
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGGCTCTTCTTGTACGTGCTTCCTTCATTGATGCATCAACGCACGCTGCTATATGACCTAGCTC
TAAGTTTAATCCATCCCGTGTGAATTCGTTTTCTAGgttttctccctctctatgttactgtatg
tttgtatggtcgtctcaaactctttggatgtttctttatgtgctcggtggctaattagccaatc
acacactg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 287
Transcript exons: 21373299-21373585
GTTTTCTCCCTCTCTATGTTACTGTATGTTTGTATGGTCGTCTCAAACTCTTTGGATGTTTCTT
TATGTGCTCGGTGGCTAATTAGCCAATCACACACTGCAGCCGCCATGGCAGCAACCTTAACCCT
GTGTGAATGGTCAGTAAGCTCACCTACATTGATCCGCTTTGTTGCGTCGATTGGAGGAACGGCT
CTTCTTGTACGTGCTTCCTTCATTGATGCATCAACGCACGCTGCTATATGACCTAGCTCTAAGT
TTAATCCATCCCGTGTGAATTCGTTTTCTAG

Genomic sequence GTTTTCTCCCTCTCTATGTTACTGTATGTTTGTATGGTCGTCTCAAACTCTTTGGATGTTTCTT
TATGTGCTCGGTGGCTAATTAGCCAATCACACACTGCAGCCGCCATGGCAGCAACCTTAACCCT
GTGTGAATGGTCAGTAAGCTCACCTACATTGATCCGCTTTGTTGCGTCGATTGGAGGAACGGCT
CTTCTTGTACGTGCTTCCTTCATTGATGCATCAACGCACGCTGCTATATGACCTAGCTCTAAGT
TTAATCCATCCCGTGTGAATTCGTTTTCTAG
Conservation Information
Conserved circRNAs NA
PMCS 0.195202294
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study