Detail information of BGIOSGA032183_circ_g.1


General Information
CircRNA Name BGIOSGA032183_circ_g.1
ID in PlantcircBase osi_circ_008844
Alias Chr10:8344098_8345593(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 6178969-6180464  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   i-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA032183
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-AT
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTCATCATGTTATATGCTACACTATTACAACATGTATGTATAGGTATGGAGTAGTACATCACAT
GTACGTATATAAATAAACAAGCATCACAAATCTCACatgacatgaaaattcataataaagaatt
aataactatggccaactgtggtccatgaagggcccagccaacaaaaaattgggcttaattttct
gtaaacag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATGACATGAAAATTCATAATAAAGAATTAATAACTATGGCCAACTGTGGTCCATGAAGGGCCCA
GCCAACAAAAAATTGGGCTTAATTTTCTGTAAACAGAATTCAATATGCAAGTGAACATTCACTT
TTGATGGTTCAAAGATAATGGAAGTTGTAATTCTCTTTGCCGCTTGCCACTTATTGTTACCATC
CTTTTGTTTGTCAGTAAGTTATAACATCAAAATATGGTGAGCACCCGGTAGCAAGTACCCTATT
CCCCTCTATCTTTCACGGTACCAACAAAGAGCAGCAATTTTTTACTCTGAATGGATGCAATTTG
AAGAGTCCAAAAAGCATAAATATATATGATACAAATTAAGGTTAGAACAACAAAGCACTCGAAG
TAAACCAAAACCGTGGCTAGCACTCCAGTAGGCAGAACCAACATAATTAGTAGTATGGCAAAAG
TGCAAAACTTTAACCAATATATGGAACCAGCAGGAACTAAGGGTCATGTCATGGAGCAATGCAC
AGGTACGGCCTTTCTTTTCACATCAACACGATGGGCAAAAACATAGGCAAACACACGAGAGCAA
AAACTAATCTAATCTCTGCACAAAGACTATGAGCAGACTTATTGGGCCTGGAGACCAAGCCAGC
ATGGACTCCAACGTGCACAGGCCCAACCACACGCAGAAAACCAACATAACCGAGCAGGCCAGGC
GAATCTTGTCCAATAATGCTACAATAATATGGCCCTTTGGTTAATCCCATTTGCTAAAACACTC
TGCTAGTATATAGACCACCGACTCAAATTAAAACTCAAACTGACTCTTAATATTAACGAACTCA
CATCATGGAACTACTAAAATAATCACTTAATCAGGCACCATTGTAATAAACTTCGCCAATTAAG
CCAAACGAAACTCCACCTACATGGTGTCGATCTGAACATACTGCTCAAATTCCTCAATTCCTTA
GCATCCCAGAGTATAATGTCAGCTCTACTTCCATATTTGTTGGGCTCTCCTTGGTTCACAAACA
CAAATACTGTACCAACTAAAATTCTAGGGTGCCCATGGACCCATAAAAACATAAATTTCCACAA
TGACCTTTATCACCCCTAGAAATTAAGCTGTTCAGCTACAAGAATCTGCTAGAAATGTACTTCA
GTTCTACAACGATTCTTTAGTTCCCTTTTTAGTTCGATTATTTCTTGGTGAGTGTGACATAATA
TAGAGAAAGATGAATCTCACAAAACATCAGCATCAAGATAGGGAACATCAAAATTCTTGACAAA
ACACATAGAAGGAGCCAACATGAAATTGTAGGTCAAGGTCAACATGAGAGAAAAAAACAAACAT
TAACATTTCAATGGTAACAAGAAACTGTAGATATCACAGCTACGGTCATCAGCTCATCATGTTA
TATGCTACACTATTACAACATGTATGTATAGGTATGGAGTAGTACATCACATGTACGTATATAA
ATAAACAAGCATCACAAATCTCAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021