Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d034522_circ_g.1 |
ID in PlantcircBase | zma_circ_006963 |
Alias | zma_circ_0000577 |
Organism | Zea mays |
Position | chr1: 295613736-295616766 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d034522 |
Parent gene annotation |
plant adhesion molecule 1 |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d034522_T002:7 Zm00001d034522_T005:8 Zm00001d034522_T004:7 Zm00001d034522_T003:7 Zm00001d034522_T001:7 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.059252134 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
295616671-295613737(+) 295616720-295613738(-) |
Potential amino acid sequence |
MELVLVRCHRSLSSYPSHLVPSDTLSIYLNRYP*(+) MDKKKGTDGTEPGPAPSRAVDRFGFIKPEQGNSPDGIPKGKSIHEREREERRIRKWRKMIGVGG NDWKHYVRRNPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYETLVIYETSASELEII RDISRTFPSHIFFQQRHGPGQRSLYNILKAYSVYDRDVGYVQGMGFLAGLLLLYMSEEDAFWLL VALLKGAVHAPMEGLYQAGLPLVQQYLSQFEKLVIELMPKLGQHFVEEMINPSMYASQWFITVF SYSFPFHLTLRVWDVFLYEGIKVVFQVGLALLRLCHDDLVKLPFEKLLYALRNFPEEATDPDVL LPLAFSFKDIDLGIWTRCLKVLSEMDKKKGTDGTEPGPAPSRAVDRFGFIKPEQGNSPDGIPKG KSIHEREREERRIRKWRKMIGVGGNDWKHYVRRNPHVVKRRIRKGIPDCLRGLVWQLISGSRDL LLMNPGVYETLVIYETSASELEIIRDISRTFPSHIFFQQRHGPGQRSLYNILKAYSVYDRDVGY VQGMGFLAGLLLLYMSEEDAFWLLVALLKGAVHAPMEGLYQAGLPLVQQYLSQFEKLVIELMPK LGQHFVEEMINPSMYASQWFITVFSYSFPFHLTLRVWDVFLYEGIKVVFQVGLALLRLCHDDLV KLPFEKLLYALRNFPEEATDPDVLLPLAFSFKDIDLGIWTRCLKVLSEMDKKKGTDGTEPGPAP SRAVDRFGFIKPEQGNSPDGIPKGKSIHEREREERRIRKWRKMIGVGGNDWKHYVRRNPHVVKR RIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYETLVIYETSASELEIIRDISRTFPSHIFFQQR HGPGQRSLYNILKAYSVYDRDVGYVQGMGFLAGLLLLYMSEEDAFWLLVALLKGAVHAPMEGLY QAGLPLVQQYLSQFEKLVIELMPKLGQHFVEEMINPSMYASQWFITVFSYSFPFHLTLRVWDVF LYEGIKVVFQVGLALLRLCHDDLVKLPFEKLLYALRNFPEEATDPDVLLPLAFSFKDIDLGIWT RCLKVLSEMDKKKGTDGTEPGPAPSRAVDRFGFIKPEQGNSPDGIPKGKSIHEREREERRIRKW RKMIGVGGNDWKHYVRRNPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYETLVIYET SASELEIIRDISRTFPSHIFFQQRHGPGQRSLYNILKAYSVYDRDVGYVQGMGFLAGLLLLYMS EEDAFWLLVALLKGAVHAPMEGLYQAGLPLVQQYLSQFEKLVIELMPKLGQHFVEEMINPSMYA SQWFITVFSYSFPFHLTLRVWDVFLYEGIKVVFQVGLALLRLCHDDLVKLPFEKLLYALRNFPE EATDPDVLLPLAFSFK(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |