Detail information of Zm00001d034522_circ_g.1


General Information
CircRNA Name Zm00001d034522_circ_g.1
ID in PlantcircBase zma_circ_006963
Alias zma_circ_0000577
Organism Zea mays
Position chr1: 295613736-295616766  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ
Parent gene Zm00001d034522
Parent gene annotation plant adhesion molecule 1
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d034522_T002:7
Zm00001d034522_T005:8
Zm00001d034522_T004:7
Zm00001d034522_T003:7
Zm00001d034522_T001:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGATGGAGCTGGTCCTGGTTCGGTGCCATCGGTCCCTTTCTTCTTATCCATCTCACTTAGTAC
CTTCAGACACCTTGTCCATATACCTAAATCGATATCcttaaatgaaaaggcaagcggcaataat
acatctggatctgtcgcttcctcagggaaatttctcaaggcatagagcagtttctcaaaaggta
atttgacc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTAAATGAAAAGGCAAGCGGCAATAATACATCTGGATCTGTCGCTTCCTCAGGGAAATTTCTC
AAGGCATAGAGCAGTTTCTCAAAAGGTAATTTGACCTGACGGTAGGATAAAAATTCAGTATTTC
TCAATATTTGTTTCAAACATGGTTTCAAGCGGAAGTGACAGAAAATACAAAATACTTACTAAAT
CATCGTGACAGAGTCTCAATAGAGCCAATCCAACTTGGAATACAACCTTAATACCCTGTTAGGT
ATCAACCAGCAATAAGAATAGCAACCAGATCAGAAAGTGCACAATATAATCAGTATGTTATTTG
GTATTACTATTACATCAATTACAGATTGGTAGATTAGCACCTAAAAATGCAAATTAATAAACAC
ATCAGACAATAACCTGATCAAATGAAATAAACTTTCAAGCCAAAAGGTTTTGGTTGCTATGAAA
AGGGTACCGAGAAAAGGAACAAGCAGCTTGTTGTTAGAAGACCATTTAAGAGTAGCACAACAAT
CTGTTTCATATACTCCCTTCGTCCACAAAAGAATACAATTCTAGCACAGTAACAAGTTGAAGTA
TATTGAGTTTGACTAACTATAAATGAAAAAAATCAATACTATAATAATAAATAAGTACCATTAG
GGTTGCCGTGAGATATATTTTCATGCTATACTAATATGACATAAACATTAATATTTTTACCTAT
ATATTTGTTCAAACTTTAGACACGTAAACCAATATTTGCACCTAGAATTGCATTCTTTTGTGGA
CAGAGGCAGTACATCTTGAGTCAAAACTCTTTATGTAAACCTTCATAACGAAACGAGTTGTATA
AATATAAGAGACTATACCATTTATGAAGCAATAGTGCATAAAGAAAAGTCAAATAACCCAAGGT
GCAATCTAAACACAAAATGCACATATGGCAGGATAAGATTCTAACCTCATAAAGAAACACATCC
CAAACTCTAAGAGTTAGATGAAATGGGAAGGAATATGAGAAAACTGTGATAAACCATTGACTTG
CATACATGCTTGGGTTTATCATTTCTTCAACAAAGTGTTGTCCCAATTTTGGCATGAGCTCAAT
AACTAATTTCTCAAACTGAGACAAATATTGCTGCACAAGCGGCAAACCAGCCTGTTCCAAGGGT
AAAAACAGATCAGTATAAATTTATAGTATGTATGTTTACGCAAGAAAAGAAGAAATTTTGCATC
TCCAGCATTACTAATCACTCAAAACTGAAGATGAATACAGATGAAATACGAGTAGCCAGGAAAA
CATTTTACTTACTAGTTTAAAATTTATATACGTCAGATAAGGATAGACAATAAAGACAGCCATA
ATATAGCCATCGAATTATAACTGGAAATCCCAATGCAATCCTAAGATAATAGCCATTACCTGAT
ACAAGCCTTCCATTGGTGCATGGACAGCTCCCTTTAGCAACGCGACTAATAACCAGAATGCATC
CTCCTCACTCATATAAAGAAGCAGCAGCCCAGCTAAAAATCCCATTCCCTGCAAAATGAATTGT
GTAAACAATAGAATATTATTCCAGAGAGATCTTTCTATCTGAAAAAATAGGTCACCGAACTCAA
AACAAACCTGCACATATCCAACATCCCTGTCATAGACAGAATATGCTTTCAAAATGTTATACAA
TGATCTTTGGCCTGGACCATGCCTTTGTTGAAAGAATATATGAGATGGAAATGTGCGTGATATG
TCACGAATAATTTCCAATTCAGAGGCCGATGTCTCATATATCACCAGTGTCTGCCCAAAGTAGA
GCACAATGATACAAATAAGGTTAATATATCAATAACGAGAACACTAGTCTACATAGAACTCTGT
TTATTAAGAAATATAAATGCAAACTGTAATAGATAAAAAAACTATAAAAAATAGGACATTAGTT
CCTTCAAAACTGTCAGGACTTAAGAGACTAGCCACAAACTTCAGTGCAGTCAATAAAGCATGGT
GGAGTTATTGTACAAACTTGCACTTCAAGAATGAGATTCAATAAGGTCCAATGTTGATGTAAGT
ATATATAATCCTTAAAGAGTTACAATAATTTATTTAACAACAATACATGTATGCTACTTCATGT
GCTGTTCACTTGTTCCCCTGTTTCTCAATCTAGTAACAGGTATAACTAGGCAAATCACAATCAT
ATAATGCCGGAAGTTGGAAGAAAAAAGGATCCTTGTGGGTACCTCGTAAACCCCTGGGTTCATT
AGTAAGAGGTCCCGACTGCCTGAAATCAACTGCCAAACAAGTCCTCTGAGACAATCAGGAATTC
CTTTCCTTATTCGCCTTTTAACCACATGAGGGTTCCTTCTAACATAATGCTTCCAGTCATTACC
ACCAACACCTATCATCTTCCTCCATTTTCTTATCCTTCTTTCCTCCCTATAGCAACATAAAAAA
GAAATAGAATAAAAGCACTTGTAAGGTAGTTTATTTAGAGAAATAGGAAGGTGAAGTAAGACAA
TAACTGATTTACACAAGTAAATAGTCTGATACGGGGGAAAGAATGGTAATATGGTGTCGGAGGC
ATGAGTAAGGTAGTAATAAAAAGGTGTGTTTATCAGTGAAGCAGTCTAATGTATTAGAACCATT
CCACCAGTAAGTGCTGGCAAAGCTAAGATCCAATCTTATGCGTAGAAATGTAGTAAGAGCTGCT
AGAAAGAAGAAAATGGAATCTAGGATGGTCTTAACAACCACCTATTGGAATCGACTAACATATC
AAATCGGTAGAAACAAGATACAACGACCCTAATATATCATACAGCCCACTGCATTCCGATAATA
CATATCTTGTATGGCAGGTCATACCTTTCACGCTCATGTATAGACTTGCCTTTTGGAATTCCAT
CAGGTGAATTGCCTTGTTCTGGCTTTATAAAACCAAATCTGTCGACGGCACGAGATGGAGCTGG
TCCTGGTTCGGTGCCATCGGTCCCTTTCTTCTTATCCATCTCACTTAGTACCTTCAGACACCTT
GTCCATATACCTAAATCGATATC
Conservation Information
Conserved circRNAs NA
PMCS 0.059252134
Functional Information
Coding potential Y
Potential coding position 295616671-295613737(+)
295616720-295613738(-)
Potential amino acid sequence MELVLVRCHRSLSSYPSHLVPSDTLSIYLNRYP*(+)
MDKKKGTDGTEPGPAPSRAVDRFGFIKPEQGNSPDGIPKGKSIHEREREERRIRKWRKMIGVGG
NDWKHYVRRNPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYETLVIYETSASELEII
RDISRTFPSHIFFQQRHGPGQRSLYNILKAYSVYDRDVGYVQGMGFLAGLLLLYMSEEDAFWLL
VALLKGAVHAPMEGLYQAGLPLVQQYLSQFEKLVIELMPKLGQHFVEEMINPSMYASQWFITVF
SYSFPFHLTLRVWDVFLYEGIKVVFQVGLALLRLCHDDLVKLPFEKLLYALRNFPEEATDPDVL
LPLAFSFKDIDLGIWTRCLKVLSEMDKKKGTDGTEPGPAPSRAVDRFGFIKPEQGNSPDGIPKG
KSIHEREREERRIRKWRKMIGVGGNDWKHYVRRNPHVVKRRIRKGIPDCLRGLVWQLISGSRDL
LLMNPGVYETLVIYETSASELEIIRDISRTFPSHIFFQQRHGPGQRSLYNILKAYSVYDRDVGY
VQGMGFLAGLLLLYMSEEDAFWLLVALLKGAVHAPMEGLYQAGLPLVQQYLSQFEKLVIELMPK
LGQHFVEEMINPSMYASQWFITVFSYSFPFHLTLRVWDVFLYEGIKVVFQVGLALLRLCHDDLV
KLPFEKLLYALRNFPEEATDPDVLLPLAFSFKDIDLGIWTRCLKVLSEMDKKKGTDGTEPGPAP
SRAVDRFGFIKPEQGNSPDGIPKGKSIHEREREERRIRKWRKMIGVGGNDWKHYVRRNPHVVKR
RIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYETLVIYETSASELEIIRDISRTFPSHIFFQQR
HGPGQRSLYNILKAYSVYDRDVGYVQGMGFLAGLLLLYMSEEDAFWLLVALLKGAVHAPMEGLY
QAGLPLVQQYLSQFEKLVIELMPKLGQHFVEEMINPSMYASQWFITVFSYSFPFHLTLRVWDVF
LYEGIKVVFQVGLALLRLCHDDLVKLPFEKLLYALRNFPEEATDPDVLLPLAFSFKDIDLGIWT
RCLKVLSEMDKKKGTDGTEPGPAPSRAVDRFGFIKPEQGNSPDGIPKGKSIHEREREERRIRKW
RKMIGVGGNDWKHYVRRNPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYETLVIYET
SASELEIIRDISRTFPSHIFFQQRHGPGQRSLYNILKAYSVYDRDVGYVQGMGFLAGLLLLYMS
EEDAFWLLVALLKGAVHAPMEGLYQAGLPLVQQYLSQFEKLVIELMPKLGQHFVEEMINPSMYA
SQWFITVFSYSFPFHLTLRVWDVFLYEGIKVVFQVGLALLRLCHDDLVKLPFEKLLYALRNFPE
EATDPDVLLPLAFSFK(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b