Detail information of BGIOSGA014754_circ_g.1


General Information
CircRNA Name BGIOSGA014754_circ_g.1
ID in PlantcircBase osi_circ_014557
Alias Chr04:25920993_25922953(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 24009667-24011628  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ
Parent gene BGIOSGA014754
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA014754-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTTTGCCCAAATGGAGATGTCATTATCAACAGAAGCTTTAACCAACTGCTGTAATGCTTCCCG
CTTTTCCAAACTTGAAACTTCGGTACCGTTGCTTATcctttcgaacatcagggctttggttact
aaaagcatcaaacagtgctggcaaaaatgtgggcaactgattcatcaattcctcctcggaaagc
cgtccaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTTCGAACATCAGGGCTTTGGTTACTAAAAGCATCAAACAGTGCTGGCAAAAATGTGGGCAA
CTGATTCATCAATTCCTCCTCGGAAAGCCGTCCAACAAGCTGCAAGATTATCCAAACAGAACCA
GCAGTCAACAACACTTGCTAAAATTATATTTGGTTTACCGGTTTTTAATCAGTCGGAGACACAA
TGCCTAGATGCTAGAGGTGTGCCAATCCAATTGTTTTATTCAAATACATATGATTCATGTGTCC
TATGCAGGGCATACATTTACGAACACACGATTAGTTTATTGGCCGCATTCTTCCGCACAAAGTA
GTAGAATGGCGTATATACTCAAACAACAGGTTGAAGAATTCAAGAAAGGGGCATCTACAAGACT
ACAACCCACTAAATTGTAACATTGAACGCTAAAGCAATTCAGATATGTTGCAATCTGACCACTT
ACCAGAGTACCCCCCCCAAAAAAATCATAATATATACATGGAACTGAGAAAAAAGCACTTGCAC
AAGAGATCAGGAAATCTAACCAAAGGATGTGTAATACGTTAGGTTTGGTGGAGCAAAATAACTG
ATAGGACAACTCAGCAGAGAGTAATTATATTATCAATTGATGCTATTTACAAAAGATCAGATAT
ATAAAGAACATATGATATGAACTTATTCACTAAAGAACCATGGCACCATGAAGTTTATATGTTA
TATTGTTATTATGTGCCATTCAAACTTAAATGGGAAACGCTCAAACAGTAAACAGGGAAAAACT
GCAGGTACGAGACACCTTTGTCAAGGAGTTGATACACACAACAAGTGTCTTTTCATCATCACTG
ACCAATAGAGGCACCACAACCTGCAGTGGAAAAAAAATCATGAAAATTAAGATAAAGCCAACTA
CAATTAGTAGAACAGGAAGTAGCAGTGGTACATAAGACATAAGAGAAGTAGTTTGTACATACAG
CAAGACATCTGAAAGGATCATATTTTGCTAACAGAACATTTAAGCACTGGTTTGCCTCATTTGA
AATCTGCAATGCCACAAAGAATCTTAACACATAGAAGACGCCAAGGAGAACAGTTCTAGAGTTA
TAATGTATATATCAAAGGCATGCATACCTTTGCCACCATGTCTTTGGTAACATGCAGAAGTTTC
TCCAGAACAATTTCAATAGATTCTTCCATAGCACCACTCTGACAGCACAATAGTCATCAGTAAT
TAGAAGTATGAAGCAATTAACTAACTTAACCTGTTCATCAACACAAAATTCTGGATACCTGATT
GTTGAGCATCTCGGCAACTAAAGACAGAGCAATCTCCCTAGTAGATGAATCAGAATCATCCAGC
ACCTCAAGCACAGCCGTTAAGATTTGATTGAAATACTGTTGTATAATTGAAGGACTGTAATTAG
AATGCAATAGTATAGATTGAAAATTTTCAGATCTACCCAAAGTTGATATAGAGATACAAGGAAG
AAAATTTGTTAGTCTCCAAGCTTCAAGCTATAACATGGGTTCCTTTCTTTCTATCATGGGGAAA
CTTTGCTTCTTTTGGCATAAGACCAATCATAGTTGGCAAACATTAAGTCCGAGTATTGGACAAA
TAGATATGTAGGATAGAACCAGACAAACTGACCAAGCACAAGTGTGGCTATAATAAACAAAATA
TGGTCACCTAAGAGCACTCTTTAGTTTTACAAGCAAACATTGCATTCAGAGGTCCAAGCTACTT
TTCAGAAATGGGAAAAAAAAGGTACATGTAAATTCTAACAGATGTTTGTCTAGTACAGACAGCC
AAGAAAAGGGCAAGAAAGGCAACTGATTAATAACATGTGGAATATTCATTGAAAAACATCAGAT
TGCAAACCTTTGCCCAAATGGAGATGTCATTATCAACAGAAGCTTTAACCAACTGCTGTAATGC
TTCCCGCTTTTCCAAACTTGAAACTTCGGTACCGTTGCTTAT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021