Detail information of AT2G17700_circ_g.2


General Information
CircRNA Name AT2G17700_circ_g.2
ID in PlantcircBase ath_circ_013617
Alias Ath_circ_FC5035
Organism Arabidpsis thaliana
Position chr2: 7686881-7687553  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT2G17700
Parent gene annotation Serine/threonine-protein kinase STY8
Parent gene strand -
Alternative splicing AT2G17700_circ_g.1 AT2G17700_circ_g.3
Support reads 2
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G17700.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCCATCCGTGGGTATTTCAATGCAGGCGGGTATAAGCTCATTGCTTGATTTGTCATGCTCAAA
GAAAGAAATAGATTTCTGTTTTGAACCAGGTTGATCcagtcactatacagagggttggagatct
tgtgcatgcacccaaaaattgaacgacgtttttgtgtcgaactttcctacagacagtaaaagca
tcagtaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGTCACTATACAGAGGGTTGGAGATCTTGTGCATGCACCCAAAAATTGAACGACGTTTTTGTG
TCGAACTTTCCTACAGACAGTAAAAGCATCAGTAACAAATGACAATGAAGCAAGCATGTTGGTT
ACTTAATACATCAAAAGAGGTTTAATGTAGGACAAGGACTGACAAAACACAAGCCTACTCGTGA
ATATAAATGTCAGACAAAGGCATCGTTGATGCCAGTCAGGCATGTTTCTGTATATAAAACTATG
AACTACTATGGGAATATTCACATGACGATGAGAATTAACTACACCGACCTCATTATAAAAACTT
CTTGAGAAAATTCTCTCAGCATCTCATTGTTTACACGATCAGGCTTGAGAAATTTGATAGCTAC
TTCCTGACTGCAATAAGTGCCTCTATGCCTGTATAGTCATCAAAAACAAATTACTCTTAACTTT
TAAATAGAAACTTACAGTTTACAAAACGAGCTTATATAACGATAATACTCACAGATCCCCATAT
GAACCAGATGCCACTTTCTTTTCAATTTTGAGCTGAGTCACGTCGATTTCCCACTCATCAGTTC
CATCCGTGGGTATTTCAATGCAGGCGGGTATAAGCTCATTGCTTGATTTGTCATGCTCAAAGAA
AGAAATAGATTTCTGTTTTGAACCAGGTTGATC
Conservation Information
Conserved circRNAs NA
PMCS 0.154570902
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017;Chen et al., 2017a