Plant Circular RNA Database

Detail information of LOC18041581_circ_igg.1

			
						 General Information
					
						CircRNA Name
						LOC18041581_circ_igg.1
					
						ID in PlantcircBase
						ptr_circ_000360
					
						Alias
						circRNA362
					
						Organism
						
							Poncirus trifoliata						
					
						Position
						
							chrNW_006262201.1: 40659564-40662843  JBrowse»						
					
						Reference genome
						
							Citrus_clementina_v1.0						
					
						Type  
						
							igg-circRNA							
									
						Identification method
						CIRI
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							LOC18041581_circ_g.1 LOC18041581_circ_g.2 LOC18041581_circ_g.3 LOC18041581_circ_g.4 LOC18041581_circ_ig.1 						
					
						Support reads
						NA
					
						Tissues
						shoots
					
						Exon boundary  
						
							No-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	LOC18041581_circ_igg.1
ID in PlantcircBase	ptr_circ_000360
Alias	circRNA362
Organism	Poncirus trifoliata
Position	chrNW_006262201.1: 40659564-40662843 JBrowse»
Reference genome	Citrus_clementina_v1.0
Type	igg-circRNA
Identification method	CIRI
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	LOC18041581_circ_g.1 LOC18041581_circ_g.2 LOC18041581_circ_g.3 LOC18041581_circ_g.4 LOC18041581_circ_ig.1
Support reads	NA
Tissues	shoots
Exon boundary	No-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GAATAAAAAACCAAAGAGAGGTTGGTGAAAAAAACTCATTACAGAGACCCCAAATTGCAAAGTC
CACATATTCCACATATCTACAAACGTTCCAACATCActccggcgtagcacggttagctagcccc
aatacttgataacattttgacatcattggtccagagatttgcaaaaaatagaagacataattat
aaactcag

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTCCGGCGTAGCACGGTTAGCTAGCCCCAATACTTGATAACATTTTGACATCATTGGTCCAGAG
ATTTGCAAAAAATAGAAGACATAATTATAAACTCAGTTTTAAGGATTCAGTTATGTAGATGTAG
TAGAAATGAACTAAGAAAGGGAAAGGAGAGCACCCTAGAAAACCCCCCTGAATAAATTAGTCCC
ACACTTCTCCAGAGAGCTGACCTTCTCTACCACTGCATTATAAAAGTTTTAAAAATGACACAAC
TACAAGGGAAACACTATGAAAAGCTCAGGTTAAAAACTCACTGTAGACACTCCCTGAGTTGCAC
AAATCCTAATACTGAACAACTCAAAACATCTCCTCGCACTGCAACAAAAGTTTGCAAAAATGAA
AGAAGCTTAAGCATTCAGATAAGACAAAATATTACTAACATACTGAAAGCATTCATAGACAGAA
TACGAAAACTAAAGAGAGGTTTTGTTTTGGGGAAGGGGGGACCCATTACAGAGATGCCAAACAG
CGAAGTCCAGATACTCCATACAAACTAATGAACATTCCAGCACCACTGCAACAAAAATTTGTGA
AAATGAAAAACCAAAACATAAACTCAACTTCTTGTATTCAGACAGAGAGCCAAAAACAAAGAGA
AATAGAAACCTCCCGAGTAAAAGACAACAAAGAGAAATAGAAACCTCCTGAGTAGAAGAAGCCC
CAAAAAATATCAAAATAAACTAGGAACAGTTTGCAATCACTCAAATCATGCGAACATGAAAAAA
ACCTTGTATATTTAGACACAACCTGACACAAAAACAATAAATTAGGGAAAAGAATGAGGAGCTC
ACCAGACACCCCAGAGTAGCATAGTCCCAGTATTCAGATAACACAAAACATTACCAACATACAG
AGAGCATTCATAGATAGAAGAGAAAAACTGCAGAGGTGTTGCAGGGGGCAAAAAACTCATTTAC
AAAGACCCAAATAGCAAAATCCGCATACTCCACATAACTATTTACAGAGACCCCAAATAGCAAA
GTCCGGATATTCCACATCTACGAACGTTCCAACATCACTGCAACAAAAATTTGCAAAACTGAAA
AACCAAAACATAACCTCAACTTTATAGTATTAAGATAAAAAGCCAAAAACAAAAAGAAAGAATG
GAAGTGACAATAGAAACCCCCGAGTAGAAGACGCCCAAAAAAATCAAAATGGATTCGGAACATT
TTGCTGTCATGAAAAAACCAAATTATAAACCTTATATATTTAGACACATCCTGACACCGAAACA
ATAATTTAGGGAAAAGAATAAGGAACTTATCAGACACCCCCGGGGTAGCATAATACCAGTATTC
CACAAAATCTTGGCCCGAGTAGCATAGTCTCAGCATTCCACAAAAACTAGGAAATTCTCCAAAT
CACTGCAACATAAATTTGCAAAAGTAGCAGGACATTGTAATGAAACGTAAGTGATCAAACAGTT
GGAAATAAAAGAAATTAACAAGGAGTAGGACTAAAAATACTTGTGAGCAACCCGCATAGCAATG
TTCTAGAATTATCAGAAGGAAGGAAATAAGAGAAAGAATGCAAGTCATCACCACCCCGAGTATG
GCACAGTTAGCTAGCCCCAATAATCGATAACGTTATGCCATCACTGCTCCAGATATTTACAAAA
AATAGAAGATAAAATCATAAACTAAGGATTCAGTCATGTAGATGTAGTGGAAATAAACTAAGAA
AGGGAAAGCAGAGCACGATAGAAAACCCCCTGAATTAAATAGTCCCACACTCCTCGAGAGAGCT
GACCTTCTCTAACACTGCATTATAAAAATTTTTAAAATGACAAAACTACAAGGGAAATACAAAA
TGACAAAACTACAAGGGAAATACAATTGACACTCCCTGAGCTGCACAAGTCCTAACATTGAACA
ACTCAAAGCATCTCCTCACACTGCAACAAAAGTTTGCACAAATGAAAGAGAGCTTAAGCATTCA
TATAAGACAAAATATTACTAACATACAGAAAGCATTCAGAGATAGAAGTGATTGTGGGGGGGGG
GGGGGGAAGGAGAAGAGTATTACGGAGACCCCAAATAGCTCAAAGCTAGTAATACTCCATATAA
ACTACTAGCTTTCCAACATCACAGCAGCAAAAATTACAAAAATTTGCGGAAATGAAAAACCAAA
ACATAACCTCAACATTATAGTATTCAGATAGAAAGCCAAAAACAAAGAGAGAGAATGGAAGTGT
CAATAGAAACCCCCCCGAATAGGAGATGCCCCAAAAATTAAAAAACAATCCCGGAACGGTTTGC
TCTCATTCGAACATGCAAAAGTGAAAAACCAAGTTACAAATGTTATATTTAGACACAACCTGAT
GCAGAAACAATAAATTAGGAAAAAGAGTAAGGAACATATCAGACACCCCACGGCAACATAGTCC
TGGTACTCCACAAAAACTTAGAAATTCTCAAATCACTGCAACATAAATTTGCAAAAGTGGCAGG
ATATTGCAATGAAACGTAAGTAATCAGATAGCCAGAAATAAAAGATTAACAATAAGTAGGACTA
AAAATAGTCATGACCAACCCACATAGCAATGTCCCAAAGTACTCAAAAGACACCTAAACTTCCT
CTAAAACTGCAGCACAAAATATACAAAAATAAACAGTTGAAATAAAATAAAAACTTAAATATTT
AAACAGGTGCACATAGAAGGGTGGTAATAGGAAACAGAATGTAAGTGATCAAAGCCCGGTGTGT
AGCGCGGTTAACCACCCCCATACTCGATAATATTTTGCCATCACTAAGCTCCACAGATTTGAAA
AAAATAGAAGACATAATTATAAACTGAATTTTGAGGATTCAGTTATGTAGATGTAGTAGAAATG
AAATAAGAAAGGGAAAAAAGAGCACGCTAGAAGACCCCCTGAATAAAATAGTCCCACACTCCCC
TAGAGTGCTCACCTTCTCTAACACTGCATTATAAAAATTTTAAAAATGACAACTACAATGCAAT
TTCTATGAAAAGCTTGGGTTAAAAGCTCACTATAGACACTCCCTGAGTTGCACAAATCCTAATA
TTTGTTGCACAATCTCCTCGCTGCAACAAAAGTTTGCAAAAATGCAAGAGACCTTAGGCAATCA
GATAAGACAAATATTAACTAACATACTGAAAGCATTCATAGATAGAATAAAAAACCAAAGAGAG
GTTGGTGAAAAAAACTCATTACAGAGACCCCAAATTGCAAAGTCCACATATTCCACATATCTAC
AAACGTTCCAACATCA
						
					

			
		

Sequences
Splice junction sequence	GAATAAAAAACCAAAGAGAGGTTGGTGAAAAAAACTCATTACAGAGACCCCAAATTGCAAAGTC CACATATTCCACATATCTACAAACGTTCCAACATCActccggcgtagcacggttagctagcccc aatacttgataacattttgacatcattggtccagagatttgcaaaaaatagaagacataattat aaactcag
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTCCGGCGTAGCACGGTTAGCTAGCCCCAATACTTGATAACATTTTGACATCATTGGTCCAGAG ATTTGCAAAAAATAGAAGACATAATTATAAACTCAGTTTTAAGGATTCAGTTATGTAGATGTAG TAGAAATGAACTAAGAAAGGGAAAGGAGAGCACCCTAGAAAACCCCCCTGAATAAATTAGTCCC ACACTTCTCCAGAGAGCTGACCTTCTCTACCACTGCATTATAAAAGTTTTAAAAATGACACAAC TACAAGGGAAACACTATGAAAAGCTCAGGTTAAAAACTCACTGTAGACACTCCCTGAGTTGCAC AAATCCTAATACTGAACAACTCAAAACATCTCCTCGCACTGCAACAAAAGTTTGCAAAAATGAA AGAAGCTTAAGCATTCAGATAAGACAAAATATTACTAACATACTGAAAGCATTCATAGACAGAA TACGAAAACTAAAGAGAGGTTTTGTTTTGGGGAAGGGGGGACCCATTACAGAGATGCCAAACAG CGAAGTCCAGATACTCCATACAAACTAATGAACATTCCAGCACCACTGCAACAAAAATTTGTGA AAATGAAAAACCAAAACATAAACTCAACTTCTTGTATTCAGACAGAGAGCCAAAAACAAAGAGA AATAGAAACCTCCCGAGTAAAAGACAACAAAGAGAAATAGAAACCTCCTGAGTAGAAGAAGCCC CAAAAAATATCAAAATAAACTAGGAACAGTTTGCAATCACTCAAATCATGCGAACATGAAAAAA ACCTTGTATATTTAGACACAACCTGACACAAAAACAATAAATTAGGGAAAAGAATGAGGAGCTC ACCAGACACCCCAGAGTAGCATAGTCCCAGTATTCAGATAACACAAAACATTACCAACATACAG AGAGCATTCATAGATAGAAGAGAAAAACTGCAGAGGTGTTGCAGGGGGCAAAAAACTCATTTAC AAAGACCCAAATAGCAAAATCCGCATACTCCACATAACTATTTACAGAGACCCCAAATAGCAAA GTCCGGATATTCCACATCTACGAACGTTCCAACATCACTGCAACAAAAATTTGCAAAACTGAAA AACCAAAACATAACCTCAACTTTATAGTATTAAGATAAAAAGCCAAAAACAAAAAGAAAGAATG GAAGTGACAATAGAAACCCCCGAGTAGAAGACGCCCAAAAAAATCAAAATGGATTCGGAACATT TTGCTGTCATGAAAAAACCAAATTATAAACCTTATATATTTAGACACATCCTGACACCGAAACA ATAATTTAGGGAAAAGAATAAGGAACTTATCAGACACCCCCGGGGTAGCATAATACCAGTATTC CACAAAATCTTGGCCCGAGTAGCATAGTCTCAGCATTCCACAAAAACTAGGAAATTCTCCAAAT CACTGCAACATAAATTTGCAAAAGTAGCAGGACATTGTAATGAAACGTAAGTGATCAAACAGTT GGAAATAAAAGAAATTAACAAGGAGTAGGACTAAAAATACTTGTGAGCAACCCGCATAGCAATG TTCTAGAATTATCAGAAGGAAGGAAATAAGAGAAAGAATGCAAGTCATCACCACCCCGAGTATG GCACAGTTAGCTAGCCCCAATAATCGATAACGTTATGCCATCACTGCTCCAGATATTTACAAAA AATAGAAGATAAAATCATAAACTAAGGATTCAGTCATGTAGATGTAGTGGAAATAAACTAAGAA AGGGAAAGCAGAGCACGATAGAAAACCCCCTGAATTAAATAGTCCCACACTCCTCGAGAGAGCT GACCTTCTCTAACACTGCATTATAAAAATTTTTAAAATGACAAAACTACAAGGGAAATACAAAA TGACAAAACTACAAGGGAAATACAATTGACACTCCCTGAGCTGCACAAGTCCTAACATTGAACA ACTCAAAGCATCTCCTCACACTGCAACAAAAGTTTGCACAAATGAAAGAGAGCTTAAGCATTCA TATAAGACAAAATATTACTAACATACAGAAAGCATTCAGAGATAGAAGTGATTGTGGGGGGGGG GGGGGGAAGGAGAAGAGTATTACGGAGACCCCAAATAGCTCAAAGCTAGTAATACTCCATATAA ACTACTAGCTTTCCAACATCACAGCAGCAAAAATTACAAAAATTTGCGGAAATGAAAAACCAAA ACATAACCTCAACATTATAGTATTCAGATAGAAAGCCAAAAACAAAGAGAGAGAATGGAAGTGT CAATAGAAACCCCCCCGAATAGGAGATGCCCCAAAAATTAAAAAACAATCCCGGAACGGTTTGC TCTCATTCGAACATGCAAAAGTGAAAAACCAAGTTACAAATGTTATATTTAGACACAACCTGAT GCAGAAACAATAAATTAGGAAAAAGAGTAAGGAACATATCAGACACCCCACGGCAACATAGTCC TGGTACTCCACAAAAACTTAGAAATTCTCAAATCACTGCAACATAAATTTGCAAAAGTGGCAGG ATATTGCAATGAAACGTAAGTAATCAGATAGCCAGAAATAAAAGATTAACAATAAGTAGGACTA AAAATAGTCATGACCAACCCACATAGCAATGTCCCAAAGTACTCAAAAGACACCTAAACTTCCT CTAAAACTGCAGCACAAAATATACAAAAATAAACAGTTGAAATAAAATAAAAACTTAAATATTT AAACAGGTGCACATAGAAGGGTGGTAATAGGAAACAGAATGTAAGTGATCAAAGCCCGGTGTGT AGCGCGGTTAACCACCCCCATACTCGATAATATTTTGCCATCACTAAGCTCCACAGATTTGAAA AAAATAGAAGACATAATTATAAACTGAATTTTGAGGATTCAGTTATGTAGATGTAGTAGAAATG AAATAAGAAAGGGAAAAAAGAGCACGCTAGAAGACCCCCTGAATAAAATAGTCCCACACTCCCC TAGAGTGCTCACCTTCTCTAACACTGCATTATAAAAATTTTAAAAATGACAACTACAATGCAAT TTCTATGAAAAGCTTGGGTTAAAAGCTCACTATAGACACTCCCTGAGTTGCACAAATCCTAATA TTTGTTGCACAATCTCCTCGCTGCAACAAAAGTTTGCAAAAATGCAAGAGACCTTAGGCAATCA GATAAGACAAATATTAACTAACATACTGAAAGCATTCATAGATAGAATAAAAAACCAAAGAGAG GTTGGTGAAAAAAACTCATTACAGAGACCCCAAATTGCAAAGTCCACATATTCCACATATCTAC AAACGTTCCAACATCA

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS

Conservation Information
Conserved circRNAs	NA
PMCS

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						playing an important role in the early flowering process

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	playing an important role in the early flowering process

			
						 Other Information
					
						References
						Zeng et al., 2018

circRNA

Detail information of LOC18041581_circ_igg.1

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