Detail information of Zm00001d027011_circ_g.4


General Information
CircRNA Name Zm00001d027011_circ_g.4
ID in PlantcircBase zma_circ_004619
Alias seedling_test_circ_001519
Organism Zea mays
Position chr4: 230850058-230851650  JBrowse»
Reference genome AGPv4.38
Type   ei-circRNA
Identification method find_circ
Parent gene Zm00001d027011
Parent gene annotation lincRNA
Parent gene strand -
Alternative splicing Zm00001d027011_circ_g.1 Zm00001d027011_circ_g.2 Zm00001d027011_circ_g.3 Zm00001d027011_circ_g.5
Support reads NA
Tissues seedling
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered Zm00001d027011_T001:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAAATTGGTGGGAAATTTACCTTCCATCCAAATCATTTCATAGACACCGCTCAATAAAGCATCA
AGGTGCATCAGTTAAAATATAGAAACCAGCTCACTCcctttggtccttttgtccttgcagatct
gctgatcactgaatcctcaagcactgctgcaatagaagtggacaacactttagatgcaattggg
catcaata
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTTGGTCCTTTTGTCCTTGCAGATCTGCTGATCACTGAATCCTCAAGCACTGCTGCAATAGA
AGTGGACAACACTTTAGATGCAATTGGGCATCAATAAAAGTGATAAAAAAATAGGAAATAGCAA
GTTAGGTACTTATCTGAGGTCTGACCCTTCTCCCATCCATTAAGTACTGATCAGCAGCATAGGA
TAGCCTTTTGAAATCACAAACATGAAGGGACAGCAGGCAGCAACACATATTGGAAATGTATGAG
TCAATCCACTTTAACCTAAATGGTCAATCCACTTTAACCTAAATGGGACACTTGCTGAGATGCA
ACCGTTTCTCAAGTCATGATGTTCCAAAGGAGTACCCGCAGAAGTTCCAAAACTATGATAAGTT
CTACGTTGGTGTTGTCTTCAGTTATTTGCCCATGGATGTCATCTATCGCTTTCCATTGTCACTT
AGTTATTTACTATGTCAAAAAAATATAGTATGAGTTTAACTGTTATGGTGAAGACTGAGTCTGT
AATATAACAGTTACGTTTATGTGTATTTCGAGCGTTATGCTATGTAATTCACTTATGTGACTGT
GTACGTGAAATTTGACCTTGGCACGTATATGGTATGCACTAGGTTACTTTTTCCAAAACCAGGT
GTGACACTAGCTCACTCCTAACATGATTTTTTGGAATGGCTAGCAAAAGCACACAAAAAAACAA
AATAATGCTATGGAAACATGTTACCATAAATATATTATCTAGGGAGAACACACATAAATGGTTC
CATGGTGTAGTGGTTATCACTCCAGACTTTGAATCTGGCAACCTGGGTTCGAGTCCCAGTGGGA
CCTATTTTTTGTAGTAAGAGAATTTGTGATATTCCACTCAAAAGATCCAATCTTTTGGAAAATC
CAATTAGCATATCCTGGTTCACTTTCATGCAATTCAGAAAGTTTGTCATCATCTGTTTCAGTAC
ACCTACCATCCTACAGGAAGGATTAAGATAGGGGTGATAGGAGTTGCGGACAAAATGCAACAAG
AATAGGACAGCTCATCTGGAGAGAAACAACAAACAAGAGAGACAAGAGAAAAGTGCATTCGCTT
GTGATCTTCAAGAGACAAAATATAAGCAACATACATGAGATAGATGAGACATTTCCGCATGACC
AATGCAACTAGTTTTCAGTTTGCTACAGTTTGTAAAAAAAATGCTTGACACACCATGTGTTTTT
TAATATAAGGGGTATTTTCCAAATATGTCCCATCTAAGCAAAGATTTTGTATTTCTTAATCAGT
CCGTTGACATGGTATTTCCAATTGACAATGTCATGTGTCATTAACAGCCCTATAATCATGATAG
ACTCAAAAGCAGAAACAAAATCAGGCATAATAAAACCCAGTAGTACTGGATTAACTATGTTTTG
ATTTCCCTACTAAAAAAGGGTGAACATAAACACAATAACAGGCTGAATGCAGATATGGCAAGGA
ATTATTTAAAATATCTAAAATTAAATTGGTGGGAAATTTACCTTCCATCCAAATCATTTCATAG
ACACCGCTCAATAAAGCATCAAGGTGCATCAGTTAAAATATAGAAACCAGCTCACTC
Conservation Information
Conserved circRNAs NA
PMCS 0.084192383
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tang et al., 2018