Detail information of Os08g0365900_circ_g.3


General Information
CircRNA Name Os08g0365900_circ_g.3
ID in PlantcircBase osa_circ_036850
Alias NA
Organism Oryza sativa
Position chr8: 16952175-16957412  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os08g0365900
Parent gene annotation Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p domain conta
ining protein. (Os08t0365900-01);Similar to NOL1/NOP2/sun family
protein. (Os08t0365900-02)
Parent gene strand -
Alternative splicing Os08g0365900_circ_g.1 Os08g0365900_circ_g.2 Os08g0365900_circ_g.4 Os08g0365900_circ_g.5
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os08t0365900-01:5
Os08t0365900-02:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACCACCATCCTCAGCAGGTTGTTCAATAGCAACCGACACTGCAACTTTGTCACCCTTTTCAAC
ATGTGAGCTGCAAGCTAAAACTCCTGGGATGTACACcagtctgaacaactgatgtagtagaact
gtcttcactggcattagtagtcccagcatcgactttattaatacaaggctcagagtcctctgcc
agtgtcac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.202254568
Functional Information
Coding potential Y
Potential coding position 16957035-16957374(-)
16952233-16957374(-)
Potential amino acid sequence MSRSGIFRVPHGVAVEMTERVYKLPSFNDVLEGEIFLQNLPSVVAARVLDPQPGERILDMCAAP
GGKTTAIAILMKDQGEIIALDRSHNKVMDILKLAAEMDLNCIKAYKLDALKSVRKTNEAKYIGE
AGSRTDAIVTLAEDSEPCINKVDAGTTNASEDSSTTSVVQTGVHPRSFSLQLTC*(-)
MLGLLMPVKTVLLHQLFRLVYIPGVLACSSHVEKGDKVAVSVAIEQPAEDGGWTVGITRGTVLQ
GLQSDAHHEERKGLYIGQGITAMSRSGIFRVPHGVAVEMTERVYKLPSFNDVLEGEIFLQNLPS
VVAARVLDPQPGERILDMCAAPGGKTTAIAILMKDQGEIIALDRSHNKVMDILKLAAEMDLNCI
KAYKLDALKSVRKTNEAKYIGEAGSRTDAIVTLAEDSEPCINKVDAGTTNASEDSSTTSVVQTG
VHPRSFSLQLTC*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017