Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G18260_circ_g.1 |
ID in PlantcircBase | ath_circ_003238 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 6280603-6280818 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | AT1G18260 |
Parent gene annotation |
ERAD-associated E3 ubiquitin-protein ligase component HRD3A |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G18260.1:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.313342329 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
6280645-6280605(-) 6280636-6280815(+) |
Potential amino acid sequence |
MFHTGVGLKKNLEMAREYFEKAVDNEDPSGHYNLGVLYLKGIGVNRDVRQATKYFFVAANAGQP KAFYQLAKMFHTGVGLKKNLEMAREYFEKAVDNEDPSGHYNLGVLYLKGIGVNRDVRQATKYFF VAANAGQPKAFYQLAKMFHTGVGLKKNLEMAREYFEKAVDNEDPSGHYNLGVLYLKGIGVNRDV RQATKYFFVAANAGQPKAFYQLAKMFHTGVGLKKNLEM(-) MEHLGELIESLWLTSICSNKEVFCCLPHIPVDSDAFKIQNSKVIMPTGVFIVNSLLKIFSCHLQ ILLKPNTSMEHLGELIESLWLTSICSNKEVFCCLPHIPVDSDAFKIQNSKVIMPTGVFIVNSLL KIFSCHLQILLKPNTSMEHLGELIESLWLTSICSNKEVFCCLPHIPVDSDAFKIQNSKVIMPTG VFIVNSLLKIFSCHLQILLKPNTSMEHLGELIESLWLTSICSNKEVFCCLPHIPVDSDAFKIQN SKVIMPTGVFIVNSLLKIFSC(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |