Detailed infomation of each circRNA
General Information | |
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CircRNA Name | BGIOSGA000187_circ_g.3 |
ID in PlantcircBase | osi_circ_002660 |
Alias | 1:44811204|44811736 |
Organism | Oryza sativa ssp. indica |
Position | chr1: 44811204-44811736 JBrowse» |
Reference genome | Oryza_indica.ASM465v1.42 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | BGIOSGA000187 |
Parent gene annotation | NA |
Parent gene strand | - |
Alternative splicing | BGIOSGA000187_circ_g.1 BGIOSGA000187_circ_g.2 BGIOSGA000187_circ_g.3 BGIOSGA000187_circ_ag.1 BGIOSGA000187_circ_g.2 BGIOSGA000187_circ_g.4 BGIOSGA000187_circ_ag.5 BGIOSGA000187_circ_ig.1 |
Support reads | NA |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | BGIOSGA000187-TA:3 |
Conservation Information | |
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Conserved circRNAs | osa_circ_013125 |
PMCS |
Functional Information | |
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Coding potential | Y |
Potential coding position |
44811726-44811206(-) 44811671-44811232(+) |
Potential amino acid sequence |
MKQVYTATEDLQPKKQFSFIIARHGLAMEIDNEIAADDNDKEGLQEIVNNTKLSEGYLTLARDI EVMEPKSLEDIYKVHLIDGGGASSSLDSARQNLAATFVNAFVNAGFGQSIQYMKQVYTATEDLQ PKKQFSFIIARHGLAMEIDNEIAADDNDKEGLQEIVNNTKLSEGYLTLARDIEVMEPKSLEDIY KVHLIDGGGASSSLDSARQNLAATFVNAFVNAGFGQSIQYMKQVYTATEDLQPKKQFSFIIARH GLAMEIDNEIAADDNDKEGLQEIVNNTKLSEGYLTLARDIEVMEPKSLEDIYKVHLIDGGGASS SLDSARQNLAATFVNAFVNAGFGQSIQYMKQVYTATEDLQPKKQFSFIIARHGLAMEIDNEIAA DDNDKEGLQEIVNNTKLSEGYLTLARDIEVMEPKSLEDIYKVHLIDGGGASSSLDSARQNLAAT FVNAFVNAGFGQ(-) MRTAFWAEDPQWRCRPASYIVSTGQIQHLRMH*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Huang et al., 2021 |