Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d011386_circ_g.3 |
ID in PlantcircBase | zma_circ_009727 |
Alias | zma_circ_0002851, GRMZM2G024738_C1 |
Organism | Zea mays |
Position | chr8: 149261170-149261558 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | find_circ, CIRI2 |
Parent gene | Zm00001d011386 |
Parent gene annotation |
Uroporphyrinogen decarboxylase |
Parent gene strand | - |
Alternative splicing | Zm00001d011386_circ_g.1 Zm00001d011386_circ_g.2 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d011386_T003:1 Zm00001d011386_T004:1 Zm00001d011386_T001:1 Zm00001d011386_T002:1 Zm00001d011386_T005:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.343281645 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
149261226-149261330(+) 149261176-149261218(-) 149261498-149261495(-) |
Potential amino acid sequence |
MGTSSLTCSLDRTGDWITGPLESEISNGTPMAGRGVSMSENRMTPSGAKARHGCSVISTMRSVF SERSRNEGWRLASAWYSAMYRPACRIIHAGGRGRPSSPRAARTSSGSSHFAESLVTPRRTGAYQ GRWGRAPSPALWTVLAIGSRAPWSPRYRTAPRWPAGA*(+) MRGAAAGARGAGRGRPPTPARVDDAAGRAVHGGVPGAGQAPPLVPGALREHGPHRRDHAAAVAC LRARRRHPVLGHTHAPAGHRGAVRYLGLQGARDPIASTVQRAGEGARPHRP*(-) MMRQAGRYMAEYQALAKRHPSFRERSENTDLIVEITLQPWRAFAPDGVILFSDILTPLPAIGVP FDISDSKGPVIQSPVRSKEQVRELVPIDLDMLQFVGESLKILRNERSRCWCARRGARTASHARP RG*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Ma et al., 2021b;Zhang et al., 2019 |