Detail information of Os04g0434600_circ_g.1


General Information
CircRNA Name Os04g0434600_circ_g.1
ID in PlantcircBase osa_circ_023885
Alias Os_ciR9345
Organism Oryza sativa
Position chr4: 21612821-21616365  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os04g0434600
Parent gene annotation Similar to OSIGBa0102D10.3 protein. (Os04t0434600-00)
Parent gene strand -
Alternative splicing NA
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0434600-00:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCGCCCATGCCCACTAAGAGAGGACTGAAGTAAGCGTGTGAGCTTTGAGTCTCTATAAGGAAT
ATGGGTAGCCTTACCATCTGTAAGTTTAGCAATTACcggaagatggtgccgtgctctagatgca
gcactaaataaatcacctgcttgagtcctccctggaaaagaatcagtaagtgctgggtcatctc
ctttccta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGGAAGATGGTGCCGTGCTCTAGATGCAGCACTAAATAAATCACCTGCTTGAGTCCTCCCTGGA
AAAGAATCAGTAAGTGCTGGGTCATCTCCTTTCCTAGTCATAGATTTTCTTCGACCATCCTTCA
GGTCAAGAAGCGGGTGTTTTTGTTGCGATGATCTAGAAAAGGAAGGTGAGCCGCTGGCTGTGCT
TTCACTGTCTACACTAGTCGACAGTCCTGACAGTTGATCTGACTTCTGCATAAGTTAAGTTACA
ACGTTAGACCATTCAAAAAAAATTACAAAATTAAATATTAATTCAGATAAATTTCTATAGATAA
TTACTCTGGGTTAAGAAATTCTTGATAACTCATCAAGCTATATCACCACTAAAAATTTCAGTTG
AGCAGTTAGCTGCACCGAACAAGTGGGAACAATGTACTAGCTGAGTGCTCATGAAATGAACATC
AAGTAGATGATAACATAAACTTAAACTAAAAAAGAAACAAAATAATCCTGAGTCTCCTTACATG
CAAAGCTGACCACTTTTTTTTTTAAGAACTCAACGGAAGACCAAGATGGCCCACCTTGAAACTC
ATTTCTTTTCTCATTAAACTAGCGCATTAAAGCTATCATGCACAAAAGAGTAACATTGAGCGTC
CTGCAAGCAAGCCGTAGGTAATAAATTTATGAGACACATAGATGATCCCATGTATCATAAAGGA
TCTTCCAAGACATCCATATATAAGTAGACCCATCCGAAGAAAATCCTCCAGGTTTGAAACGATT
TAAGTGGAAATAAGTATAGATAGGATCATAGGAATGTGAGTCCTTCACATAGCTTGACATGATT
TGATCTCTGCAAGCAAGAGGCTCAGATTCACCAATTTTGGTGTAGGTACTTTTGGATGACTTCT
TTGCACCCAAACTAGAAGAGAACAAACATTTATGTAGCAGGCACCTCCAAACAACTTTCATTAG
AGATAAGGAAGCACAAACTGATAGGATACAAACCAATATTATCTCTACTCAATTCTAATGATCA
GATATTAGCTAGTCTTATTTAATTTATTCAAATACTTGGTTTATTCTTGCAGCTGAAGATGATC
TGGCACTAGAATTCTAAACCTTGCCCCCAGGACGTTGACAACAACACAAGCATTTACAGCTTTA
GCAGGACTACTAGCCTTTATTGCACCTGACCAAAAGAGTATATTTTTATTTCACATTTTTTGAT
ATAAATAAAGTACTAAGCAAGTAAGTCCAATTTATTCATGATATTTTGCTTGATACCACTGCAA
AGATCACCAAGTTGGAAAATACCATAACATGTGTTGCAACGATCACAAAGCCACCTACGACAGT
TTCCAATTCACACATCTTTGAGATGTACTTATCTAATTTTCTAATATTCGAAATATGGTTGAAC
TATATTATTCAATTTAATCAAATTTAACTGGAGGTAGCATGTATGAAACAGACACTTTTAATAA
TAGACTGGTTCAAGACATATCCAATAAAGCCACCTATAATCCTTTTTAAAAATATACAGGCAGA
ATTGTCTGCCGTTGCAAGCGCAAAACCTTTTGCTAGGTGAAAACAGAAAATGGAACTGAGCAGC
ATAGACTGCCTCTCTTCGTTGTATTTATAATCCATAGAGAAAATCACCTTTAGTTTGAACCAAC
CAAGCATTCCCCGTCTGCGATTCCTTCTATCAAACCTCAGTGACTCATCAGGATTGTTAGAATC
AAGTTTTCCTTCAACAGAAAACTCTGAATCGAGACTAACATCATCATCCTCCATGGAGTACTCC
CGCTTCCGATCAGGCAAATAAGCAAGCTACAATTAAGATAGAATTCAGGTACTCCAATGCAAGA
GTAGTGCTTTGTTCAGTGGCAAAACCAAAATGCATTTTTTCCATGCTCCAATCAGTTTAATATT
TAACCATTTCAGCTAAATATCTGTTCTCATTGCACAGATAACAATTTTTCAGGCTCTATTCAGT
TTAATGAGTGATGACTACCCATTTCAGCTAAATATGACTAAGAACAGATCAGTTCTTTGTTGCA
CATAGAACAGTTTTTCAGTCCATTCAGTTTGATGCTTTGCAAATTTTGTACTATGTAGTTTACA
CACATACATTATGTGTTCTTAGAACAGACCTCCCTCATGATATCGTTGAGTAGTTCTGAAGTTG
TTAGGAGGTACCAGAACATCACCTCATAAATAGTGGGTTTCTATTATCTTGGAAACCGTTTTAG
CTAAATTATAATGCAAAAGGAGCTAGTAGGTTGTGTATTAGTAAGTGGCAAGGTGCAAAATCAC
ATCATATAATCCCAATGTTACATGTAGCAGTAAAAGCTACAACAAGATAAGAAATTTTACCATG
ATAAGAAAACGGAGATACATCAGAAAAGAGGTATCACTATCATATTTTTTCACACCTGCACTAT
TTCTAAATTCTAGAACACTTGTTGCAACTCAGTAACTCTTCTTTTTTCAAGAGAAAACTTAATG
CTGTAATTCTTAAAAGATATTGCTCTAAGCTGAACTAAAAGAATAAGATGATGCAGCCAAACAA
AGAAGGAAAAAGAGCTTGGGTTTATAAACCTCATCTTCCCCAAATGAATGCCGTCGACGGAGGC
TAGCCTTTCCTGAAACATTTGAGGATATGGAACTTTTCGTTGATACCAATATCAATTTTGTTAA
CCTCTGAATTCTACCCATCAATGCAGCTTTTGCTTCTTCCTCCTCTTCTAGCCTTGACTGGAGT
TTCACTTGACCAGCTTCAAGCTATCACGCAGAAAGAATAAAAAGTAGAACTAATCATCTTGGAT
GCAACGATGGCCATCAAGGTAATAGCAAGAACTAATCCAAAGGTACAAGGGATGAATTCAATCT
CCCAGTCCTTGGATGCTATCTAGCACAATATTGTATAGAATATATTCACCTGCAGGTCATAAAA
GCTAACTTATCTGACAAAGATGGTAAAAAAAAGAAAACAAACCTGCAGTTTTAAGCTAACAAGA
TCCTCTTGATCTGTTGGAGGAATGTACCCATTACCCATCATACCACGTCTTAGTTGCTGCAGCT
CTTCTTTCAAGCAGGTTATCTCTTTTTGATACTTCTTTATCAAAGACTTCTCATCAATTATCTG
ATAAGATAAATGCATAAACATCAGTAATAAGCAATTAAGCACCATATAGTATAATGATTCTTAC
CTTATTTTGAGAAGCCTTTATTTCTATATGCTTGCTCCTGTGGGCAAATTTTAATGTATTATGT
GTCTCTTCACTGTTGCTGGAAGCAGGGGTAACTGTGCAAATAAGCTGTAACAAAGATAAAATTC
AGAAAGTAGTAAGCATATGTTTCTGTAGGTTTGTGGCCCCACACAAATATGTGGGAACTCTTTA
TGGCAGGATATATGTGGAAACTTCACGAAGAATTAAAGATTCACTCACAGAAATGCGCCCATGC
CCACTAAGAGAGGACTGAAGTAAGCGTGTGAGCTTTGAGTCTCTATAAGGAATATGGGTAGCCT
TACCATCTGTAAGTTTAGCAATTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.113203028
Functional Information
Coding potential Y
Potential coding position 21616331-21612856(+)
21615871-21612823(-)
21612911-21616364(-)
Potential amino acid sequence MGSLTICKFSNYRKMVPCSRCSTK*(+)
MMGNGYIPPTDQEDLVSLKLQLEAGQVKLQSRLEEEEEAKAALMGRIQRLTKLILVSTKSSISS
NVSGKASLRRRHSFGEDELAYLPDRKREYSMEDDDVSLDSEFSVEGKLDSNNPDESLRFDRRNR
RRGMLGWFKLKKSDQLSGLSTSVDSESTASGSPSFSRSSQQKHPLLDLKDGRRKSMTRKGDDPA
LTDSFPGRTQAGDLFSAASRARHHLPVIAKLTDGKATHIPYRDSKLTRLLQSSLSGHGRISLIC
TVTPASSNSEETHNTLKFAHRSKHIEIKASQNKIIDEKSLIKKYQKEITCLKEELQQLRRGMMG
NGYIPPTDQEDLVSLKLQLEAGQVKLQSRLEEEEEAKAALMGRIQRLTKLILVSTKSSISSNVS
GKASLRRRHSFGEDELAYLPDRKREYSMEDDDVSLDSEFSVEGKLDSNNPDESLRFDRRNRRRG
MLGWFKLKKSDQLSGLSTSVDSESTASGSPSFSRSSQQKHPLLDLKDGRRKSMTRKGDDPALTD
SFPGRTQAGDLFSAASRARHHLPVIAKLTDGKATHIPYRDSKLTRLLQSSLSGHGRISLICTVT
PASSNSEETHNTLKFAHRSKHIEIKASQNKIIDEKSLIKKYQKEITCLKEELQQLRRGMMGNGY
IPPTDQEDLVSLKLQLEAGQVKLQSRLEEEEEAKAALMGRIQRLTKLILVSTKSSISSNVSGKA
SLRRRHSFGEDELAYLPDRKREYSMEDDDVSLDSEFSVEGKLDSNNPDESLRFDRRNRRRGMLG
WFKLKKSDQLSGLSTSVDSESTASGSPSFSRSSQQKHPLLDLKDGRRKSMTRKGDDPALTDSFP
GRTQAGDLFSAASRARHHLPVIAKLTDGKATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPAS
SNSEETHNTLKFAHRSKHIEIKASQNKIIDEKSLIKKYQKEITCLKEELQQLRRGMMGNGYIPP
TDQEDLVSLKLQLEAGQVKLQSRLEEEEEAKAALMGRIQRLTKLILVSTKSSISSNVSGKASLR
RRHSFGEDELAYLPDRKREYSMEDDDVSLDSEFSVEGKLDSNNPDESLRFDRRNRRRGMLGWFK
LKKSDQLSGLSTSVDSESTASGSPSFSRSSQQKHPLLDLKDGRRKSMTRKGDDPALTDSFPGRT
QAGDLFSAASRARHHLP(-)
MTQHLLILFQGGLKQVIYLVLHLEHGTIFR*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015