Plant Circular RNA Database

Detail information of Os11g0217500_circ_g.3

			
						 General Information
					
						CircRNA Name
						Os11g0217500_circ_g.3
					
						ID in PlantcircBase
						osa_circ_008870
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr11: 6117834-6123987  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os11g0217500						
					
						Parent gene annotation
						
							Similar to mRNA capping enzyme, C-terminal domain containing pro
tein, expressed. (Os11t0217500-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os11g0217500_circ_g.1 Os11g0217500_circ_g.2 Os11g0217500_circ_g.4 Os11g0217500_circ_g.5 Os11g0217500_circ_g.6 Os11g0217500_circ_g.7 Os11g0217500_circ_g.8 Os11g0217500_circ_g.9 Os11g0217500_circ_g.10 Os11g0217500_circ_g.11 Os11g0217500_circ_g.12 Os11g0217500_circ_g.13 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os11t0217500-01:11

General Information
CircRNA Name	Os11g0217500_circ_g.3
ID in PlantcircBase	osa_circ_008870
Alias	NA
Organism	Oryza sativa
Position	chr11: 6117834-6123987 JBrowse»
Reference genome	IRGSP-1.0.38
Type	u-circRNA
Identification method	CIRCexplorer
Parent gene	Os11g0217500
Parent gene annotation	Similar to mRNA capping enzyme, C-terminal domain containing pro tein, expressed. (Os11t0217500-01)
Parent gene strand	-
Alternative splicing	Os11g0217500_circ_g.1 Os11g0217500_circ_g.2 Os11g0217500_circ_g.4 Os11g0217500_circ_g.5 Os11g0217500_circ_g.6 Os11g0217500_circ_g.7 Os11g0217500_circ_g.8 Os11g0217500_circ_g.9 Os11g0217500_circ_g.10 Os11g0217500_circ_g.11 Os11g0217500_circ_g.12 Os11g0217500_circ_g.13
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os11t0217500-01:11

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TTCATCTTCCTCAGGCAATGGTGAGGCATTTAAATCCATTGAGAAGGTCATTCAACATCCACTA
CTTCATATATCCTCAATAACGTTTTGAGATTTGCACctgaaaaataagaccatcagcatcatgt
gaaagtgatggaataaactccttaagtagcttcgttactgtagaaagaagccaaaaatcctttc
tcctgacc

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 2541
Transcript exons: 6117834-6117932,6118026-6118154,6119160-6119282,6119368-
6120199,6120412-6121018,6121094-6121231,6122527-6122589,
6122664-6122747,6123031-6123182,6123298-6123433,6123810-
6123987
CTGAAAAATAAGACCATCAGCATCATGTGAAAGTGATGGAATAAACTCCTTAAGTAGCTTCGTT
ACTGTAGAAAGAAGCCAAAAATCCTTTCTCCTGACCGAAAATAGTTCCATATCATATTTGTACA
TTGGGTTGCTCTTAACGCCACTCTCAAACTGTTTTTTTTCATAATAACGTGGACGAATTATTTC
ATCTTCAAGCAGCCTCCATCTTTCAGAAAATGGCAACTTGGTTTTTGACACGGCATCAAGTGCC
ATCAGATCATATGCTAAATACCTCCTCTTCAATCCTGAATCTGGTACTGTGTCTATAATCATTT
CTCCATCAATCAAAGTCATCTCATGTAGTCCTTCATTAAGATTCCTATGGGGAAAGCGCATTTG
AACTCTTCTGAAGCAAAAATTCCGATCAATCAAGAAACAGCCATCCCTCATTATAAGCATCATA
TATCGGGTTCCATCAGCTTTCCATGTAGCAAAGTAGTATCGCTGTCTGAGTAGTTGCAAATTCT
CACTGCGGAGCGTAAAAAGGAATTTAGAACAAGAACATAGTTAGAGTGGGAATCAAATGAATAC
TAAATAAGGACCATTTGAAACAAAATAGTTTCATACGAGAAAAAGGACGCTACAAAAAAAAACC
TCTAAATCAAAACCGGGCATTTCTTTCCTCCCCTGAAAGAACAATAATTTTCTTCAGCATAGCA
GGCGCGATCTCATAGTTTCAAGGCTTAACTGATAAAAAAAGAGTCGCATTTAAGTTTTAATATG
TGTACATAAAAAAATTTGGGACAAGTTACATGAAAAGATCTGAAGAAATTAATGACATAAAAGA
AAGGCTTTCTGCAATCAGAAATCTGTTGTTCATATGTGAAATGGAGCTTTCTAAGAGAAGGGGT
TGGGTGCATATTTCCAACCCATCAAGTGCACAAATTTTACCTACCAACCTTATATTAGAGGCAG
AGATTTAAATTTTTCATAAACTACTTTCTACAGTTTTGCTTTCTGCAAAGCCCCAAAGAACATC
AGAAATCAAAACGCACAGATAACATGTAAGAGATAATGGACTTAACACAGATACTAATAAGTTA
CTAGTATTACAAACAATGCATGAAGTCCAGATTACTGTTAGCCACCTGTTAAGAGAGACAGGAT
GTGATCCAGGAAACTGTGCATGCCCTCTCACAGGGGGCATTTCCAGCAAGCGATAACATACGAC
ACGCAGAGCATCTTGCTGATCATATGGTACAGCATCTCCTAGCACATCATCATTAGTGATAACT
TTATCTTCCACCTCATTCTGCAAGATACAAGGGCTCAAAAGCAAGAAAATAGCTTTGAATATTC
CAAGCAAGTTTGCTTCATGACAATTAAAAAAAACAATATGAGCCAGGAGATATAGTAAATTACA
TCCAAAGTAAAGTCCAAAAATCCAATCAAATAATAAAGTAGGTCGTATGAACTCAAAACTCTAC
CTTTATGTCCATAAATGAAAAACCTTTCGAGAATTACAAGGAATCAGGCACTTAATTCTCTACC
AAATTACTTGGAAGTAATTTCAGATTTGAATATCTGAAAATGCTTACATGTACTGGTGCAAGAT
CACCATTCTCATCATCATCATCTTGCTTGGCTTCACCATTTAAATCAAGATCGGATGACCTTTT
CCATTCTGGTGTTGAAGGGCATGTTATCATATGCTCAGGAACCTCATGATAAAATGAATACAGT
GCTTCAATGTAGTCCCTCTTATATATACCAGGCGGTCTCCTTTTTGCAAATATGTTTATCGCCT
CAGCGACGCAGGATACTTGTGTTCGCATAAGGTAATGGATAATCATGAAACCAGTACGATTATG
ACCATGGGTACAGTGAACAAGAATATATTTAGGATTCTTTGACTGCTTCTGTCGGTCAAGAAAC
ATCATCACCTCATAGACAAACCAATTAACAGATTCATTATCAGGTACAGCATCTCTTCCCTTGC
ATGGAATCTTGACATGCTTAATACCTTGCCTTGTCCATTCTGCAGGTGAGTAATATCGAGTAGT
ATTTGTCAAATCAATCACCAAACCTATTTCACGACCAGCTTTTCTTTGTTTATTAACTACTTGT
TTGGAAGAATATCTTTTCCCAGGAGGCACCAAGTCATTGAATGTTTCATCAAGAGGAACCTTGG
AAGGTATGATTTTGTCTATTGGCTCACCAAATGCTGGACAATTCATCCAACCATCAGGTGCCTC
TTTTATTCGACCTCTACCAGCTCTGTTATAAGGTGCATAATCGTTCCTAATCTGCTGAGAATGT
AATCTTGAGCCTTCATCTTGTTGCTCTCTCTTTAATTTTTTGCGTCTCTCTTCACGCTCCCTTC
GCATTGTAGCAACAGCAGACTCAACATGCTCCTCCTGTGCAAAATCAACCTCGACCTGTTGTTC
ATAAGGCTGTTCATCTTCCTCAGGCAATGGTGAGGCATTTAAATCCATTGAGAAGGTCATTCAA
CATCCACTACTTCATATATCCTCAATAACGTTTTGAGATTTGCAC
						
					

						Genomic sequence
						
							TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.						
					

			
		

Sequences
Splice junction sequence	TTCATCTTCCTCAGGCAATGGTGAGGCATTTAAATCCATTGAGAAGGTCATTCAACATCCACTA CTTCATATATCCTCAATAACGTTTTGAGATTTGCACctgaaaaataagaccatcagcatcatgt gaaagtgatggaataaactccttaagtagcttcgttactgtagaaagaagccaaaaatcctttc tcctgacc
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 2541 Transcript exons: 6117834-6117932,6118026-6118154,6119160-6119282,6119368- 6120199,6120412-6121018,6121094-6121231,6122527-6122589, 6122664-6122747,6123031-6123182,6123298-6123433,6123810- 6123987 CTGAAAAATAAGACCATCAGCATCATGTGAAAGTGATGGAATAAACTCCTTAAGTAGCTTCGTT ACTGTAGAAAGAAGCCAAAAATCCTTTCTCCTGACCGAAAATAGTTCCATATCATATTTGTACA TTGGGTTGCTCTTAACGCCACTCTCAAACTGTTTTTTTTCATAATAACGTGGACGAATTATTTC ATCTTCAAGCAGCCTCCATCTTTCAGAAAATGGCAACTTGGTTTTTGACACGGCATCAAGTGCC ATCAGATCATATGCTAAATACCTCCTCTTCAATCCTGAATCTGGTACTGTGTCTATAATCATTT CTCCATCAATCAAAGTCATCTCATGTAGTCCTTCATTAAGATTCCTATGGGGAAAGCGCATTTG AACTCTTCTGAAGCAAAAATTCCGATCAATCAAGAAACAGCCATCCCTCATTATAAGCATCATA TATCGGGTTCCATCAGCTTTCCATGTAGCAAAGTAGTATCGCTGTCTGAGTAGTTGCAAATTCT CACTGCGGAGCGTAAAAAGGAATTTAGAACAAGAACATAGTTAGAGTGGGAATCAAATGAATAC TAAATAAGGACCATTTGAAACAAAATAGTTTCATACGAGAAAAAGGACGCTACAAAAAAAAACC TCTAAATCAAAACCGGGCATTTCTTTCCTCCCCTGAAAGAACAATAATTTTCTTCAGCATAGCA GGCGCGATCTCATAGTTTCAAGGCTTAACTGATAAAAAAAGAGTCGCATTTAAGTTTTAATATG TGTACATAAAAAAATTTGGGACAAGTTACATGAAAAGATCTGAAGAAATTAATGACATAAAAGA AAGGCTTTCTGCAATCAGAAATCTGTTGTTCATATGTGAAATGGAGCTTTCTAAGAGAAGGGGT TGGGTGCATATTTCCAACCCATCAAGTGCACAAATTTTACCTACCAACCTTATATTAGAGGCAG AGATTTAAATTTTTCATAAACTACTTTCTACAGTTTTGCTTTCTGCAAAGCCCCAAAGAACATC AGAAATCAAAACGCACAGATAACATGTAAGAGATAATGGACTTAACACAGATACTAATAAGTTA CTAGTATTACAAACAATGCATGAAGTCCAGATTACTGTTAGCCACCTGTTAAGAGAGACAGGAT GTGATCCAGGAAACTGTGCATGCCCTCTCACAGGGGGCATTTCCAGCAAGCGATAACATACGAC ACGCAGAGCATCTTGCTGATCATATGGTACAGCATCTCCTAGCACATCATCATTAGTGATAACT TTATCTTCCACCTCATTCTGCAAGATACAAGGGCTCAAAAGCAAGAAAATAGCTTTGAATATTC CAAGCAAGTTTGCTTCATGACAATTAAAAAAAACAATATGAGCCAGGAGATATAGTAAATTACA TCCAAAGTAAAGTCCAAAAATCCAATCAAATAATAAAGTAGGTCGTATGAACTCAAAACTCTAC CTTTATGTCCATAAATGAAAAACCTTTCGAGAATTACAAGGAATCAGGCACTTAATTCTCTACC AAATTACTTGGAAGTAATTTCAGATTTGAATATCTGAAAATGCTTACATGTACTGGTGCAAGAT CACCATTCTCATCATCATCATCTTGCTTGGCTTCACCATTTAAATCAAGATCGGATGACCTTTT CCATTCTGGTGTTGAAGGGCATGTTATCATATGCTCAGGAACCTCATGATAAAATGAATACAGT GCTTCAATGTAGTCCCTCTTATATATACCAGGCGGTCTCCTTTTTGCAAATATGTTTATCGCCT CAGCGACGCAGGATACTTGTGTTCGCATAAGGTAATGGATAATCATGAAACCAGTACGATTATG ACCATGGGTACAGTGAACAAGAATATATTTAGGATTCTTTGACTGCTTCTGTCGGTCAAGAAAC ATCATCACCTCATAGACAAACCAATTAACAGATTCATTATCAGGTACAGCATCTCTTCCCTTGC ATGGAATCTTGACATGCTTAATACCTTGCCTTGTCCATTCTGCAGGTGAGTAATATCGAGTAGT ATTTGTCAAATCAATCACCAAACCTATTTCACGACCAGCTTTTCTTTGTTTATTAACTACTTGT TTGGAAGAATATCTTTTCCCAGGAGGCACCAAGTCATTGAATGTTTCATCAAGAGGAACCTTGG AAGGTATGATTTTGTCTATTGGCTCACCAAATGCTGGACAATTCATCCAACCATCAGGTGCCTC TTTTATTCGACCTCTACCAGCTCTGTTATAAGGTGCATAATCGTTCCTAATCTGCTGAGAATGT AATCTTGAGCCTTCATCTTGTTGCTCTCTCTTTAATTTTTTGCGTCTCTCTTCACGCTCCCTTC GCATTGTAGCAACAGCAGACTCAACATGCTCCTCCTGTGCAAAATCAACCTCGACCTGTTGTTC ATAAGGCTGTTCATCTTCCTCAGGCAATGGTGAGGCATTTAAATCCATTGAGAAGGTCATTCAA CATCCACTACTTCATATATCCTCAATAACGTTTTGAGATTTGCAC
Genomic sequence	TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_009399 						
					
						PMCS
						0.210040925

Conservation Information
Conserved circRNAs	osi_circ_009399
PMCS	0.210040925

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							6119465-6123966(-)
						
						Potential amino acid sequence
						
							MMLIMRDGCFLIDRNFCFRRVQMRFPHRNLNEGLHEMTLIDGEMIIDTVPDSGLKRRYLAYDLM
ALDAVSKTKLPFSERWRLLEDEIIRPRYYEKKQFESGVKSNPMYKYDMELFSVRRKDFWLLSTV
TKLLKEFIPSLSHDADGLIFQVQISKRY*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	6119465-6123966(-)
Potential amino acid sequence	MMLIMRDGCFLIDRNFCFRRVQMRFPHRNLNEGLHEMTLIDGEMIIDTVPDSGLKRRYLAYDLM ALDAVSKTKLPFSERWRLLEDEIIRPRYYEKKQFESGVKSNPMYKYDMELFSVRRKDFWLLSTV TKLLKEFIPSLSHDADGLIFQVQISKRY*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os11g0217500_circ_g.3

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