Detail information of BGIOSGA016713_circ_g.2


General Information
CircRNA Name BGIOSGA016713_circ_g.2
ID in PlantcircBase osi_circ_014535
Alias Chr04:25610351_25611051(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 23667435-23668135  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA016713
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-TA
Number of exons covered BGIOSGA016713-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTCTTCTGTGGTCTGGATTCTAATTTTGTTTTATTTACCGTGTAGTATGATCTCATTGGGAAA
CTGCGATCCCTCAAGCGATATCTACTTCTTGACCAAggtgggtctatgagggcgttatagatga
tccttacggtgaattcttcattgctgaaaacaaatccttgcagaaggtgccgaatgacttagaa
tttctggc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTGGGTCTATGAGGGCGTTATAGATGATCCTTACGGTGAATTCTTCATTGCTGAAAACAAATC
CTTGCAGAAGGTGCCGAATGACTTAGAATTTCTGGCCTACTTAAATTCCATCGTTCTCTGCATT
TTCATAAGACTAGAATACTGGGTTTGTTATATTCTTAAGATAATCAGAGGCTTTCTTTGATTTT
GATAGGAGAGCCTTACTCAAGATTATGATGCTAAATATTGGCAGCAAAGATACAGTCTAAAAGA
TGGCATCCCTAGTTTCCTTACCAATGTTGCCGCCACAATACTGACAACTGGAAAATATCTTAAT
GTTATGAGAGAATGTGAGTACACTGTCCAGGTATGCATGATTATTTTCTGTGGTTGCATCACTA
GATGCTATTTTATATGTGTGTGTTATAAGAACACACTTGTCTTACATACTATGCTTAGGTTCCC
TTGTCAGAGAGTTCTAAGCTGATGGGCTTTGGTTCAAACCACCAATATCTTGAATGCATCAAAT
CTGCGTATGACTTTGCAAGTGGTGAACTCTTGACTCTAATGAAAGATAAGGTTACAATTGTTCA
TAGCAAATGCACTATTAGATTTCATTTTCTTCTGTGGTCTGGATTCTAATTTTGTTTTATTTAC
CGTGTAGTATGATCTCATTGGGAAACTGCGATCCCTCAAGCGATATCTACTTCTTGACCAA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021