Detail information of Os03g0101900_circ_g.2


General Information
CircRNA Name Os03g0101900_circ_g.2
ID in PlantcircBase osa_circ_041182
Alias NA
Organism Oryza sativa
Position chr3: 140422-141545  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os03g0101900
Parent gene annotation Similar to Phosphatidylserine decarboxylase. (Os03t0101900-01);S
imilar to Phosphatidylserine decarboxylase. (Os03t0101900-02)
Parent gene strand +
Alternative splicing Os03g0101900_circ_g.1
Support reads NA
Tissues root
Exon boundary   No-No
Splicing signals   AT-AG
Number of exons covered Os03t0101900-02:5
Os03t0101900-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGAAGAAGAAGATTTTTCTAGAGAGCATACAGAACAAAGTAATCCCGCAGATTCAAATGCAAA
ATCATGGTGGCGAGTATCAGTGGCTAAACCCAAATTatttcaaggtagtcaatagaacttggcc
atttgctgactattccggagctttatttgacatacaacaactgcacactgatgatattctcaat
acaggctt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 475
Transcript exons: 140422-140429,140518-140583,140660-140720,141110-141219,
141316-141545
ATTTCAAGGCTTCATTTCTCAGGCTTCTGCCATTGCGTTCGATGTCACGTTTATGGGGATCCTT
GATGGAAGTGGAACTTCCAGTGTTCATGCGCCCTGCCATCTATAAAGCATGGGCTAGAGCCTTC
CACTCCAATTTGCAAGAAGCTGCTATGCCACTAGAAGAATACCCTTCTTTACAGGCATTCTTCA
TCCGTAGTCTCAAAGAAGGTTCAAGGCCCATTGATGCAGACCCAAACTGTCTGGTGAGTCCTGT
GGATGGTAAAGTTCTGCGGCTTGGAGAACTTAGAGGTCCAGGAACCATGATTGAGCAAGTGAAG
GGCTTTTCTTATTCTGCTGCTTCTCTTCTCGGTGCAAGTTCATCTCTTCATGGTGCTGAAGAAG
AAGATTTTTCTAGAGAGCATACAGAACAAAGTAATCCCGCAGATTCAAATGCAAAATCATGGTG
GCGAGTATCAGTGGCTAAACCCAAATT

Genomic sequence ATTTCAAGGTAGTCAATAGAACTTGGCCATTTGCTGACTATTCCGGAGCTTTATTTGACATACA
ACAACTGCACACTGATGATATTCTCAATACAGGCTTCATTTCTCAGGCTTCTGCCATTGCGTTC
GATGTCACGTTTATGGGGATCCTTGATGGAAGTGGTCCGTACTTTTACAACTACAGAGCTGCTG
TATTATTTATTTCCCTACTCAATCCAAATAATTTCATATCTTGTAGGAACTTCCAGTGTTCATG
CGCCCTGCCATCTATAAAGCATGGGCTAGAGCCTTCCACTCCAGTATGTCTTCTCCTGTTATGA
TGCTTTCTTATATTACAGTTCATTAGGTAATTTCACTCTGATGATTGACTTGCATTTTAGAGTA
TCTAGTGCAGAGGTTGTGTGCCTGCACACTGCTAGATTGACTTTGAAATATATTTTTTTGACCA
AAATGACTTTGAAATATATGCAGTTTTAGACTTTTTAGTGCATTGGAATGAGTAGTACACATTA
TTCTTGATATAACACATGAATACTTGCTATTCCCGTGAGGCAAGTTTTTGGCAAGAACTTGCTT
CTCCATAGATAGTGCAATGCTTCTAAGAAAGTCATGCTTAGTTAGTAGCACTTCTTTCAGAAAT
TTATGTGCCATCTTTCTGAAATAAAATGATGATTGTTGAGTACTGTAGATTTGCAAGAAGCTGC
TATGCCACTAGAAGAATACCCTTCTTTACAGGCATTCTTCATCCGTAGTCTCAAAGAAGGTTCA
AGGCCCATTGATGCAGACCCAAACTGTCTGGTAACTGGTAACAATATATTTATTCTGCATAGCC
TGTTTATTAATGTGGTGATAATTTGAGACTGATGTGCTAGGTGCATTCCATTTTACAATTAGGT
GAGTCCTGTGGATGGTAAAGTTCTGCGGCTTGGAGAACTTAGAGGTCCAGGAACCATGATTGAG
CAAGTGAAGGGCTTTTCTTATTCTGCTGCTTCTCTTCTCGGTGCAAGTTCATCTCTTCATGGTG
CTGAAGAAGAAGATTTTTCTAGAGAGCATACAGAACAAAGTAATCCCGCAGATTCAAATGCAAA
ATCATGGTGGCGAGTATCAGTGGCTAAACCCAAATT
Conservation Information
Conserved circRNAs NA
PMCS 0.263624496
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study