Detail information of Os03g0235000_circ_igg.1


General Information
CircRNA Name Os03g0235000_circ_igg.1
ID in PlantcircBase osa_circ_018748
Alias NA
Organism Oryza sativa
Position chr3: 7129325-7129804  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os03g0235000_circ_ig.1 Os03g0235000_circ_ig.2
Support reads 1
Tissues root
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTATCGCATCGATGACTTCGTACCCTCTCACCGAGTTGTTGTTCGGCGCCGCGAACTTCTCGCT
GTTTGTGCCGTCAAGGAGGATGGACGCGTCACAGCCctgataagaccacaacatcggttgcgtt
gagaccgacatccttgaacctcgcagtgataacgctgatcgaatcgaaagggctaggcaagtta
ctgttcgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGATAAGACCACAACATCGGTTGCGTTGAGACCGACATCCTTGAACCTCGCAGTGATAACGCT
GATCGAATCGAAAGGGCTAGGCAAGTTACTGTTCGCCCCCGTCTGATTTGCCACCAGACCATCT
CTTCTTCCCAGGAGGACATCATAATCAGGTCCTCCACTCTGCAAAGACCAACACAGATATATTC
AGCATGACTGAAAAATCAATTGTTCTTTTGCTCGATTGGTAATACTATAGTGCTTTACTATCAA
AGATGAATTTTCATCCCTCCATTCGAGACATAGGAACGTACAAGTAGTACTCCGTATTTAGCTG
CAAGGGCTACTATGTCGGCGCAGGAGACGACTCCCGGGCAGGCGCTCTCGAGGTCGGCCTTTAT
CGCATCGATGACTTCGTACCCTCTCACCGAGTTGTTGTTCGGCGCCGCGAACTTCTCGCTGTTT
GTGCCGTCAAGGAGGATGGACGCGTCACAGCC
Conservation Information
Conserved circRNAs osi_circ_014107
PMCS 0.148370885
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017