Detail information of Os02g0710800_circ_igg.3


General Information
CircRNA Name Os02g0710800_circ_igg.3
ID in PlantcircBase osa_circ_016218
Alias Os02circ24063/Os_ciR475
Organism Oryza sativa
Position chr2: 29447854-29451295  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method SMALT, Segemehl, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os02g0710800_circ_igg.1 Os02g0710800_circ_igg.2 Os02g0710800_circ_g.1
Support reads 17/78
Tissues leaf and panicle/root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGATCTTTACTGAGCAGACAGTGCAGTGAGAGTGTGACACTGAACAGCGTTGTAGTGCTCATT
GGGCAAAGCTTTTGCATTCTGGCTTGTGCGGTGCAGggtgatgttggttgtggtaaaaccgtag
ttgctttccttgcatgcatggaggtcattagctcaggatttcaggtatctatactacaaaccaa
catccttg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 166
Transcript exons: 29447854-29447923,29451200-29451295
GGTGATGTTGGTTGTGGTAAAACCGTAGTTGCTTTCCTTGCATGCATGGAGGTCATTAGCTCAG
GATTTCTCTTTACTGAGCAGACAGTGCAGTGAGAGTGTGACACTGAACAGCGTTGTAGTGCTCA
TTGGGCAAAGCTTTTGCATTCTGGCTTGTGCGGTGCAG

Transcript length: 167
Transcript exons: 29447854-29447925,29451201-29451295
GGTGATGTTGGTTGTGGTAAAACCGTAGTTGCTTTCCTTGCATGCATGGAGGTCATTAGCTCAG
GATTTCAGCTTTACTGAGCAGACAGTGCAGTGAGAGTGTGACACTGAACAGCGTTGTAGTGCTC
ATTGGGCAAAGCTTTTGCATTCTGGCTTGTGCGGTGCAG

Transcript length: 199
Transcript exons: 29447854-29447925,29451169-29451295
GGTGATGTTGGTTGTGGTAAAACCGTAGTTGCTTTCCTTGCATGCATGGAGGTCATTAGCTCAG
GATTTCAGCCGCTGTGCATTCTTGGAGATTGACCTGTGATCTTTACTGAGCAGACAGTGCAGTG
AGAGTGTGACACTGAACAGCGTTGTAGTGCTCATTGGGCAAAGCTTTTGCATTCTGGCTTGTGC
GGTGCAG

Transcript length: 228
Transcript exons: 29447854-29447925,29451121-29451221,29451241-29451295
GGTGATGTTGGTTGTGGTAAAACCGTAGTTGCTTTCCTTGCATGCATGGAGGTCATTAGCTCAG
GATTTCAGGACCTTGCACAATTTCCAGGACTAAAAGTTGAGCTCAGCATGAGACAACCGCTGTG
CATTCTTGGAGATTGACCTGTGATCTTTACTGAGCAGACAGTGCACAGCGTTGTAGTGCTCATT
GGGCAAAGCTTTTGCATTCTGGCTTGTGCGGTGCAG

Transcript length: 245
Transcript exons: 29447854-29447925,29451123-29451295
GGTGATGTTGGTTGTGGTAAAACCGTAGTTGCTTTCCTTGCATGCATGGAGGTCATTAGCTCAG
GATTTCAGCCTTGCACAATTTCCAGGACTAAAAGTTGAGCTCAGCATGAGACAACCGCTGTGCA
TTCTTGGAGATTGACCTGTGATCTTTACTGAGCAGACAGTGCAGTGAGAGTGTGACACTGAACA
GCGTTGTAGTGCTCATTGGGCAAAGCTTTTGCATTCTGGCTTGTGCGGTGCAG

Transcript length: 257
Transcript exons: 29447854-29447927,29451113-29451295
GGTGATGTTGGTTGTGGTAAAACCGTAGTTGCTTTCCTTGCATGCATGGAGGTCATTAGCTCAG
GATTTCAGGTCAAGCAACGACCTTGCACAATTTCCAGGACTAAAAGTTGAGCTCAGCATGAGAC
AACCGCTGTGCATTCTTGGAGATTGACCTGTGATCTTTACTGAGCAGACAGTGCAGTGAGAGTG
TGACACTGAACAGCGTTGTAGTGCTCATTGGGCAAAGCTTTTGCATTCTGGCTTGTGCGGTGCA
G

Genomic sequence GGTGATGTTGGTTGTGGTAAAACCGTAGTTGCTTTCCTTGCATGCATGGAGGTCATTAGCTCAG
GATTTCAGGTATCTATACTACAAACCAACATCCTTGCCTTATGTACTGTATATAAAAGGATTTT
ATCAACTAAAAGGACAGCTTACTGAAGCAAACTAGATGCTTAATCCAAATAGGATATACACGAA
AAATGATTATCTTCCTCCTAGTTGTACTCTTCAGTTCTTCATTAATGAGATGTTAGTCTAACAT
ATACCTTGTAAAATTATTTCTAGGCTGCTTTCATGGTTCCAACGGAGGTTCTTGCCCTCCAGCA
TTATGAACATCTAACTTCATTGCTGGAGAAGTTTGATGGAGATGAATGCAAACCAAACATTGCT
TTACTAACTGGTTCAACTTCCACGAGGGAATCAAGGATTATTCGAAATGCAAGCATTCTTTCTA
GACTCTCAAGTTCCCATACGCATAGATTCATATATTTATGTGTTATTGTTATTCTATGGCAGGG
TCTCAAGACAGGAGAAATAGCAATGGTCATTGGAACACACAGCTTAATTGGTGATAAAACCGAA
TTCTCAGCTTTGCGCATCTCTGTTATAGATGAGCAGCAGCGCTTTGGTGTTGTTCAAAGAGGAA
GGTTTAATAGTAAGGTAATTTGCTGAGCATTTGCTATTTACATTGAATAAAAACCATACACGTC
CTTTTTGACTGTTACTTTTTTTGCGGGGACTTTTTGACTGTTACTTTGCTCCTGCATTGTCACT
CATTCTGTAAACCTTGTTGTTGAATAAAATCACACACATCCTTCGTTTACTTACTTTGCTCCAG
GATTGTCACCCATTCTGTAAACTTTGTTGGCAAACTTAGAAAGAAAATTGCTAATTACTACTCC
TTCCATCCTAAAACATAGCAGCTTTTAGCGTTCAAAATTTGTCCCAAAACATAGCAACTTCTCC
ATGTACTTCATCATCTGAACCAATCACAACCATCTCTCATTTAATTTCCCCACCTACTTCCTCA
TCAAAACCAATCCTAACCATCTCTCATTTAATTTCACCTCTCTCCTTAATCTCCATGAAAAACT
CTAGAAGTGCTTATATTTTGGGGCTTAGGGAGTAAGAAGTATGCCTCTGGATTTCCATGTTCGT
GTATCTTATTTTGTGGTAAGATGGGCCAGAGCGTTCCTACTGACTTTTTTCTTCTTTCTGTTCT
TACAAACTAGCATATCACTGCAGAAAATGACCCATCATTACAATTTGCTATTCTTGCTGTTATT
ACAATAGCTAGCATATCATTGCAGAAAATGATGGTAATAACGGGTTAATGATAATTTTATTTAA
TAAAAATCCCAATTCAATGGGTAATATGCTAGTGATTATATAAAATGCTATGGTGAAAGCCTTC
AAGGAGTGTGCTGTAGTTCTCAAGGCTGCCTAATTGTCCAAAACAAAAGATAATGTATCTGGTA
CTTACACTTGAGTATTTGATATCCAAACCTCGTTGCATAATTCATGTCTTTCTTATTTTGGTTT
CAAATTTAACATAGTTAACATTTGTTTGTTAATACAAATTACTGCCATTCATTACAGCTATATA
CCCCTTCCACGAAATCGAGTGATGATGATACAATCTCAGACGAGAATTCCGCTTCTGAAATATT
TATGGCTCCCCATGTTCTTGCTATGTCCGCTACTCCAATCCCAAGAACGTTGGCTCTTGCTCTG
TATGGGGACATGTCCCTTACACAGGTATTTTACAGGCTTATGGCATATAAGGCTTCGTTCGTTT
CTTCTGTTTGGTAGTTGATTTTCTGCACACGCCAAACGAGAAAGCTCATTAGTACATGATTAAT
TAAGTTTTAACTATTATAAACTTGAAAAATGGTTTTCTTTGATTTTTTAAACAACTCCTATATA
GAAAACTTTTATAAAAACACAGCATTTAATAGTTTAAAAAACATGCTAACAGAAAACGAGGAAG
TTGAAGTTTTGAGTTGAAGAAAAGAACATAGCCTAAATTGAGTATTCCAAATACTTACTCATTG
GAAGTAAAATGTCATATCGCGTACTATGTGGGGCACAGGGTGAAAACTACATACATCGAGGGAC
TAATTCTAGGCTAGCACAATTATATCTTTAACAACTAGTAGTCCACCCTGTTGTTTTCCAGGAT
CCGCTACTTTATGACTTCACATATTGGATAGGATATAGTGCAAAAATGTTCTTGCATTTTTCAT
TTTTCATGTTCCAGGACCTGTTACTTTAACAACTAGTAGGGTCTTTCATTTTTCACAGCTATTT
CAAATCTTTACAATTGTGATCCACGTTTCTTATAGATCACGGACTTGCCTCCAGGAAGACAACC
TATAGAAACTCTTGCTCTTGAAGGAAATGATGCTGGTTTTGAATCTGTCTTCCAGGTGATGACA
TGACTTCATTCAATATTTTTTCTTTTTGTTTCAGATCTTTGTTGTTTTCCTTTTCTGTCCCAAT
CTGCACTTGGATATGGTTGGGATCAATTTGCTTATCATTTTTAAATACTTATGGCTTGAAGATG
ATGAGTGATGAACTGGTTGATGGAGGCAAGGTCTACCTCGTATATCCTATCATAGAAGAATCAG
AGCAGCTACCACAACTTCATGCAGCAAAAGCCGAGTTTGATTCCATAAAGCAAAAATTTGAAGG
TTATCCCTGTGGGCTGTTGCACGGTCGCATGAGGAGCGATGAGAAGGATGGAGCCCTCAGCAGT
TTTAGATCCGGGGAAACACGTATTCTCCTCTCAACACAAGTGATTGAGATTGGAGTCGATGTTC
CTGATGCTTCCATGATGGTTGTCATGAATGCTGAGAGATTTGGAATGTCTCAGCTGCACCAGTT
AAGGGGTCGGGTAGGGCGTGGCGAAAGGAAATCCAGATGTGTGTTCCTATGCTCCACTCCTAGC
GCGCTGCCAAGGTTGAAGGTGCTTGAGAAGTCATCCGATGGATTCTACTTGGCTAACGCCGACC
TGCTACTGCGTGGCCCTGGTGATCTACTCGGCAAGAAACAGTCAGGGCATCTTCCAGAGTTTCC
AATAGCTAGACTGGAGATTGATGGCAGTATTCTACAAGAAGCTCATCTTGCTGCACTTGTAAGT
TCATTTGCTAAACCCCAATTCGTGTTGCTATTAATGATCAGACAACTCTTCTATCACTGTAGTA
TATAACTTATTTGTTCATGTTTTTAAAAGTAGCTTTTTTGTGGCAGAACGTTTTGGGAACAAGC
AACGACCTTGCACAATTTCCAGGACTAAAAGTTGAGCTCAGCATGAGACAACCGCTGTGCATTC
TTGGAGATTGACCTGTGATCTTTACTGAGCAGACAGTGCAGTGAGAGTGTGACACTGAACAGCG
TTGTAGTGCTCATTGGGCAAAGCTTTTGCATTCTGGCTTGTGCGGTGCAG
Conservation Information
Conserved circRNAs osi_circ_004217* osi_circ_012195 osi_circ_004216*
PMCS 0.428662459
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015;Ye et al., 2015