Plant Circular RNA Database

Detail information of Os08g0414700_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os08g0414700_circ_g.1
					
						ID in PlantcircBase
						osa_circ_037057
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr8: 19831552-19833626  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os08g0414700						
					
						Parent gene annotation
						
							Similar to Trehalose-6-phosphate synthase (Fragment). (Os08t0414
700-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os08g0414700_circ_g.2 Os08g0414700_circ_g.3 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os08t0414700-01:1

General Information
CircRNA Name	Os08g0414700_circ_g.1
ID in PlantcircBase	osa_circ_037057
Alias	NA
Organism	Oryza sativa
Position	chr8: 19831552-19833626 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	CIRCexplorer
Parent gene	Os08g0414700
Parent gene annotation	Similar to Trehalose-6-phosphate synthase (Fragment). (Os08t0414 700-01)
Parent gene strand	-
Alternative splicing	Os08g0414700_circ_g.2 Os08g0414700_circ_g.3
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os08t0414700-01:1

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AAACCATGGTCCCACAACCTTCTGTGTTGAAACCAAAATAGTGACAAACCAATTCGTTTAAGCC
CTTACGTCGAAATAGCAAGCACCACCGTTTGAATTCctgacaaaatagccatgttctgctgcaa
taccaagcttctgacatggagcaaaccactcatcaagcaaactacgcgctcttccactgactat
gaatacat

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTGACAAAATAGCCATGTTCTGCTGCAATACCAAGCTTCTGACATGGAGCAAACCACTCATCAA
GCAAACTACGCGCTCTTCCACTGACTATGAATACATCATTCTTCGGGTCATCACACAAGCTGTT
GAGAATAGTAATAAGTTCATCGCTTGGAGCTTTATTGATTGATGACTGGGGTACAAGAGTGCCA
TCATAGTCAAGAAATATTGCCCTTCTGGTAGCCTTGTTGTAAGAAGAAGCAAAGTGTTCCAAAG
AGAGCTTTCTAAAGCCAGGAGAAAGAGCAATAACTCTGAAGTTCAGACCAAAACCAATAGCCCA
GCACCTTCGGCTGTAGTGATCTTTGCATGCCCTTTCCAGATCTTGAGCAAAGCTATGAGCCCAG
TAAGCAACACTATGAGATCTAACATAACGGTAGTGCTTTTCATGCCGTAGCCTTTTCTCGGATT
CAGTCAAGTCTGTTGCATGGTGTAAGGCATCAGCCACATCGTCAACACTCCAAGGATTTACCCT
GAAAGCACCACTAAGAGATGGTGAGCAACCAACAAACTCAGACACAATTAGTGTGCTTGTGTGA
TGGCAATTTGTGTCACTGCCTCTGGCATTATCTATCTCCTCATTTCCCTGCCGGCAAACAGTGT
ACTCATATGGTACCAAGTTCATACCATCCCTCAGAGCATTTACAATACAACAATCAGATGCAGC
ATAGAATGCAATCTTTTCATAAAATGGTATGCGATGATCAATAAGGACAACAGGCTTGTAATCT
ACAGAGCCATACTTAAGGTTGATTCTTTCAGCTACAGAGACAGATTCTGTTATTGCTTCCTCCA
CGTCTTTCCCTGTGCTTCTTGCTGGATTGACAATCTGTACAAGGACAACCTTCCCTCTGAGTTT
CGGGTTCCTATCTAGAAGTAGCTCCAACCCAAGCAGTTTTAGACTGATTCCTTTGAAGATGTCC
ATGTCATCTACACCTAACATGAGCATCTTGCCTTTATACCTTTGTTCAATTTCTTGAACCTTCT
TTACTGTAGCAGGCAACTTTAGGATGGACTCAAGACGGCCAACATGGACACCCACTGAGAGGAT
CTTCAGGCTCACTGTTCTTCCAAAGTAATCTATTCCAATGTAACCGCGCTTTGATTCATAATGC
AGACCCAATAATCTGCTGCAACAAGAAAGGAAGTGGCGGGCATAGTCAAATGTTTGGAAACCAA
TAAGATCAGCATTAAGCAATGACTTCAGGATCTCATCCCTTACAGGCAGTGACCTGTAGATTTC
TGAGGAGGGAAATGGACTGTGGAGAAAAAATCCTAGCTTTATTCGGTGTAACCTCTTCCTCAGA
AATGTTGGGAGAAGCATGAGGTGATAATCATGAACCCAGACATGATCATCATCCGTATTAATAG
CTTCCATAACTTTGTCGGCAAAGAGTTTGTTAGCTCGGACATAGGCTTGAAACAGGGAGCGATC
AAAGAGCTCACCTTTGTCAAGACAAATGGGAAGCATATAGTGGAAAAGTGGCCACAATTGCTGT
TTACAGAAGCCATGATAGAACTGCTGCTGGAGGTCAGGAGGGAGAAAAGTAGGTATGCATCGGT
AATCTCTAAGAAGCTTCTGTGCAACTTGATCCTGCTCACTGGGATCTACCTGAACCTTCAAACT
ACCCACATAAATGACATCAGTCTCATTTGAAAAACCATCTTTAAGTTGCATGAGCAGTGCATCA
TCATCCCTTGAGAAGGACCATTGCCCAGCTTCATCTTTTGTACAGTTCAGTGGAAGGAAGTTGG
CAACAATTATTTTCCTCTCAACAGAAGATGCTGAACCAACTGAATCGCCATCACTTCTAGTGTC
CCAATCAGGATCAGATATAATGCCAGGAGAGGTTACCACACGAGGAAGAGATTTAAAAGGTTGC
CGAAAGTCAACTCCATCTCCACAACTCATTTCTAACAGATTTGAATAAGATTTTGAAACCATGG
TCCCACAACCTTCTGTGTTGAAACCAAAATAGTGACAAACCAATTCGTTTAAGCCCTTACGTCG
AAATAGCAAGCACCACCGTTTGAATTC
						
					

			
		

Sequences
Splice junction sequence	AAACCATGGTCCCACAACCTTCTGTGTTGAAACCAAAATAGTGACAAACCAATTCGTTTAAGCC CTTACGTCGAAATAGCAAGCACCACCGTTTGAATTCctgacaaaatagccatgttctgctgcaa taccaagcttctgacatggagcaaaccactcatcaagcaaactacgcgctcttccactgactat gaatacat
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTGACAAAATAGCCATGTTCTGCTGCAATACCAAGCTTCTGACATGGAGCAAACCACTCATCAA GCAAACTACGCGCTCTTCCACTGACTATGAATACATCATTCTTCGGGTCATCACACAAGCTGTT GAGAATAGTAATAAGTTCATCGCTTGGAGCTTTATTGATTGATGACTGGGGTACAAGAGTGCCA TCATAGTCAAGAAATATTGCCCTTCTGGTAGCCTTGTTGTAAGAAGAAGCAAAGTGTTCCAAAG AGAGCTTTCTAAAGCCAGGAGAAAGAGCAATAACTCTGAAGTTCAGACCAAAACCAATAGCCCA GCACCTTCGGCTGTAGTGATCTTTGCATGCCCTTTCCAGATCTTGAGCAAAGCTATGAGCCCAG TAAGCAACACTATGAGATCTAACATAACGGTAGTGCTTTTCATGCCGTAGCCTTTTCTCGGATT CAGTCAAGTCTGTTGCATGGTGTAAGGCATCAGCCACATCGTCAACACTCCAAGGATTTACCCT GAAAGCACCACTAAGAGATGGTGAGCAACCAACAAACTCAGACACAATTAGTGTGCTTGTGTGA TGGCAATTTGTGTCACTGCCTCTGGCATTATCTATCTCCTCATTTCCCTGCCGGCAAACAGTGT ACTCATATGGTACCAAGTTCATACCATCCCTCAGAGCATTTACAATACAACAATCAGATGCAGC ATAGAATGCAATCTTTTCATAAAATGGTATGCGATGATCAATAAGGACAACAGGCTTGTAATCT ACAGAGCCATACTTAAGGTTGATTCTTTCAGCTACAGAGACAGATTCTGTTATTGCTTCCTCCA CGTCTTTCCCTGTGCTTCTTGCTGGATTGACAATCTGTACAAGGACAACCTTCCCTCTGAGTTT CGGGTTCCTATCTAGAAGTAGCTCCAACCCAAGCAGTTTTAGACTGATTCCTTTGAAGATGTCC ATGTCATCTACACCTAACATGAGCATCTTGCCTTTATACCTTTGTTCAATTTCTTGAACCTTCT TTACTGTAGCAGGCAACTTTAGGATGGACTCAAGACGGCCAACATGGACACCCACTGAGAGGAT CTTCAGGCTCACTGTTCTTCCAAAGTAATCTATTCCAATGTAACCGCGCTTTGATTCATAATGC AGACCCAATAATCTGCTGCAACAAGAAAGGAAGTGGCGGGCATAGTCAAATGTTTGGAAACCAA TAAGATCAGCATTAAGCAATGACTTCAGGATCTCATCCCTTACAGGCAGTGACCTGTAGATTTC TGAGGAGGGAAATGGACTGTGGAGAAAAAATCCTAGCTTTATTCGGTGTAACCTCTTCCTCAGA AATGTTGGGAGAAGCATGAGGTGATAATCATGAACCCAGACATGATCATCATCCGTATTAATAG CTTCCATAACTTTGTCGGCAAAGAGTTTGTTAGCTCGGACATAGGCTTGAAACAGGGAGCGATC AAAGAGCTCACCTTTGTCAAGACAAATGGGAAGCATATAGTGGAAAAGTGGCCACAATTGCTGT TTACAGAAGCCATGATAGAACTGCTGCTGGAGGTCAGGAGGGAGAAAAGTAGGTATGCATCGGT AATCTCTAAGAAGCTTCTGTGCAACTTGATCCTGCTCACTGGGATCTACCTGAACCTTCAAACT ACCCACATAAATGACATCAGTCTCATTTGAAAAACCATCTTTAAGTTGCATGAGCAGTGCATCA TCATCCCTTGAGAAGGACCATTGCCCAGCTTCATCTTTTGTACAGTTCAGTGGAAGGAAGTTGG CAACAATTATTTTCCTCTCAACAGAAGATGCTGAACCAACTGAATCGCCATCACTTCTAGTGTC CCAATCAGGATCAGATATAATGCCAGGAGAGGTTACCACACGAGGAAGAGATTTAAAAGGTTGC CGAAAGTCAACTCCATCTCCACAACTCATTTCTAACAGATTTGAATAAGATTTTGAAACCATGG TCCCACAACCTTCTGTGTTGAAACCAAAATAGTGACAAACCAATTCGTTTAAGCCCTTACGTCG AAATAGCAAGCACCACCGTTTGAATTC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.193841659

Conservation Information
Conserved circRNAs	NA
PMCS	0.193841659

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							19833535-19833586(-)
19831614-19833594(-)
19831598-19833586(-)
						
					

						Potential amino acid sequence
						
							MVSKSYSNLLEMSCGDGVDFRQPFKSLPRVVTSPGIISDPDWDTRSDGDSVGSASSVERKIIVA
NFLPLNCTKDEAGQWSFSRDDDALLMQLKDGFSNETDVIYVGSLKVQVDPSEQDQVAQKLLRDY
RCIPTFLPPDLQQQFYHGFCKQQLWPLFHYMLPICLDKGELFDRSLFQAYVRANKLFADKVMEA
INTDDDHVWVHDYHLMLLPTFLRKRLHRIKLGFFLHSPFPSSEIYRSLPVRDEILKSLLNADLI
GFQTFDYARHFLSCCSRLLGLHYESKRGYIGIDYFGRTVSLKILSVGVHVGRLESILKLPATVK
KVQEIEQRYKGKMLMLGVDDMDIFKGISLKLLGLELLLDRNPKLRGKVVLVQIVNPARSTGKDV
EEAITESVSVAERINLKYGSVDYKPVVLIDHRIPFYEKIAFYAASDCCIVNALRDGMNLVPYEY
TVCRQGNEEIDNARGSDTNCHHTSTLIVSEFVGCSPSLSGAFRVNPWSVDDVADALHHATDLTE
SEKRLRHEKHYRYVRSHSVAYWAHSFAQDLERACKDHYSRRCWAIGFGLNFRVIALSPGFRKLS
LEHFASSYNKATRRAIFLDYDGTLVPQSSINKAPSDELITILNSLCDDPKNDVFIVSGRARSLL
DEWFAPCQKLGIAAEHGYFVRNSNGGACYFDVRA*(-)
MSGLLHVRSLVLQQNMAILSGIQTVVLAIST*(-)
MSEAWYCSRTWLFCQEFKRWCLLFRRKGLNELVCHYFGFNTEGCGTMVSKSYSNLLEMSCGDGV
DFRQPFKSLPRVVTSPGIISDPDWDTRSDGDSVGSASSVERKIIVANFLPLNCTKDEAGQWSFS
RDDDALLMQLKDGFSNETDVIYVGSLKVQVDPSEQDQVAQKLLRDYRCIPTFLPPDLQQQFYHG
FCKQQLWPLFHYMLPICLDKGELFDRSLFQAYVRANKLFADKVMEAINTDDDHVWVHDYHLMLL
PTFLRKRLHRIKLGFFLHSPFPSSEIYRSLPVRDEILKSLLNADLIGFQTFDYARHFLSCCSRL
LGLHYESKRGYIGIDYFGRTVSLKILSVGVHVGRLESILKLPATVKKVQEIEQRYKGKMLMLGV
DDMDIFKGISLKLLGLELLLDRNPKLRGKVVLVQIVNPARSTGKDVEEAITESVSVAERINLKY
GSVDYKPVVLIDHRIPFYEKIAFYAASDCCIVNALRDGMNLVPYEYTVCRQGNEEIDNARGSDT
NCHHTSTLIVSEFVGCSPSLSGAFRVNPWSVDDVADALHHATDLTESEKRLRHEKHYRYVRSHS
VAYWAHSFAQDLERACKDHYSRRCWAIGFGLNFRVIALSPGFRKLSLEHFASSYNKATRRAIFL
DYDGTLVPQSSINKAPSDELITILNSLCDDPKNDVFIVSGRARSLLDEWFAPCQKLGIAAEHGY
FVRNSNGGACYFDVRA*(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	19833535-19833586(-) 19831614-19833594(-) 19831598-19833586(-)
Potential amino acid sequence	MVSKSYSNLLEMSCGDGVDFRQPFKSLPRVVTSPGIISDPDWDTRSDGDSVGSASSVERKIIVA NFLPLNCTKDEAGQWSFSRDDDALLMQLKDGFSNETDVIYVGSLKVQVDPSEQDQVAQKLLRDY RCIPTFLPPDLQQQFYHGFCKQQLWPLFHYMLPICLDKGELFDRSLFQAYVRANKLFADKVMEA INTDDDHVWVHDYHLMLLPTFLRKRLHRIKLGFFLHSPFPSSEIYRSLPVRDEILKSLLNADLI GFQTFDYARHFLSCCSRLLGLHYESKRGYIGIDYFGRTVSLKILSVGVHVGRLESILKLPATVK KVQEIEQRYKGKMLMLGVDDMDIFKGISLKLLGLELLLDRNPKLRGKVVLVQIVNPARSTGKDV EEAITESVSVAERINLKYGSVDYKPVVLIDHRIPFYEKIAFYAASDCCIVNALRDGMNLVPYEY TVCRQGNEEIDNARGSDTNCHHTSTLIVSEFVGCSPSLSGAFRVNPWSVDDVADALHHATDLTE SEKRLRHEKHYRYVRSHSVAYWAHSFAQDLERACKDHYSRRCWAIGFGLNFRVIALSPGFRKLS LEHFASSYNKATRRAIFLDYDGTLVPQSSINKAPSDELITILNSLCDDPKNDVFIVSGRARSLL DEWFAPCQKLGIAAEHGYFVRNSNGGACYFDVRA(-) MSGLLHVRSLVLQQNMAILSGIQTVVLAIST(-) MSEAWYCSRTWLFCQEFKRWCLLFRRKGLNELVCHYFGFNTEGCGTMVSKSYSNLLEMSCGDGV DFRQPFKSLPRVVTSPGIISDPDWDTRSDGDSVGSASSVERKIIVANFLPLNCTKDEAGQWSFS RDDDALLMQLKDGFSNETDVIYVGSLKVQVDPSEQDQVAQKLLRDYRCIPTFLPPDLQQQFYHG FCKQQLWPLFHYMLPICLDKGELFDRSLFQAYVRANKLFADKVMEAINTDDDHVWVHDYHLMLL PTFLRKRLHRIKLGFFLHSPFPSSEIYRSLPVRDEILKSLLNADLIGFQTFDYARHFLSCCSRL LGLHYESKRGYIGIDYFGRTVSLKILSVGVHVGRLESILKLPATVKKVQEIEQRYKGKMLMLGV DDMDIFKGISLKLLGLELLLDRNPKLRGKVVLVQIVNPARSTGKDVEEAITESVSVAERINLKY GSVDYKPVVLIDHRIPFYEKIAFYAASDCCIVNALRDGMNLVPYEYTVCRQGNEEIDNARGSDT NCHHTSTLIVSEFVGCSPSLSGAFRVNPWSVDDVADALHHATDLTESEKRLRHEKHYRYVRSHS VAYWAHSFAQDLERACKDHYSRRCWAIGFGLNFRVIALSPGFRKLSLEHFASSYNKATRRAIFL DYDGTLVPQSSINKAPSDELITILNSLCDDPKNDVFIVSGRARSLLDEWFAPCQKLGIAAEHGY FVRNSNGGACYFDVRA*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os08g0414700_circ_g.1

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